RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 SCAMP5Q8TAC9 235 aa4.9□□□□□ -1.63
PRPF39-210ENST00000556718 ASB12Q8WXK4 309 aa4.9□□□□□ -1.63
PRPF39-210ENST00000556718 HDAC2Q92769 488 aaKnown RBP4.9□□□□□ -1.63
PRPF39-210ENST00000556718 MAELQ96JY0 434 aaKnown RBP4.9□□□□□ -1.63
PRPF39-210ENST00000556718 PBKQ96KB5 322 aa4.9□□□□□ -1.63
PRPF39-210ENST00000556718 COG8Q96MW5 612 aa4.9□□□□□ -1.63
PRPF39-210ENST00000556718 NUDT22Q9BRQ3 303 aa4.9□□□□□ -1.63
PRPF39-210ENST00000556718 WACQ9BTA9 647 aa4.9□□□□□ -1.63
PRPF39-210ENST00000556718 NOD2Q9HC29 1040 aa4.9□□□□□ -1.63
PRPF39-210ENST00000556718 UBN1Q9NPG3 1134 aa4.9□□□□□ -1.63
PRPF39-210ENST00000556718 VPS45Q9NRW7 570 aa4.9□□□□□ -1.63
PRPF39-210ENST00000556718 RASSF1Q9NS23 344 aa4.9□□□□□ -1.63
PRPF39-210ENST00000556718 SMC4Q9NTJ3 1288 aa4.9□□□□□ -1.63
PRPF39-210ENST00000556718 NDUFAF4Q9P032 175 aa4.9□□□□□ -1.63
PRPF39-210ENST00000556718 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.9□□□□□ -1.63
PRPF39-210ENST00000556718 ITIH6Q6UXX5 1313 aa4.9□□□□□ -1.63
PRPF39-210ENST00000556718 H0Y3Z8 333 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 EYA2O00167 538 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 HOXC11O43248 304 aaPredicted RBP4.89□□□□□ -1.63
PRPF39-210ENST00000556718 TK1P04183 234 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 EBLN1P0CF75 366 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 ARP10275 920 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 HGFP14210 728 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 CD19P15391 556 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 RXRAP19793 462 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 BDNFP23560 247 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 YY1P25490 414 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 MCM2P49736 904 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 CCT8P50990 548 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 PNLIPRP1P54315 467 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 VAMP2P63027 116 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 ITIH3Q06033 890 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 ANKRD1Q15327 319 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 PROSER3Q2NL68 480 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 P3H1Q32P28 736 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 SLC9A4Q6AI14 798 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 RRAGAQ7L523 313 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 TECPR1Q7Z6L1 1165 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 TMTC1Q8IUR5 882 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.89□□□□□ -1.63
PRPF39-210ENST00000556718 TMEM171Q8WVE6 324 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 OSCP1Q8WVF1 389 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 OSBPL9Q96SU4 736 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 EIF3CQ99613 913 aaKnown RBP4.89□□□□□ -1.63
PRPF39-210ENST00000556718 JMJD4Q9H9V9 463 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 NRIP3Q9NQ35 241 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 IRAK4Q9NWZ3 460 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 DKK3Q9UBP4 350 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 SERTAD3Q9UJW9 196 aa4.89□□□□□ -1.63
PRPF39-210ENST00000556718 RRP7AQ9Y3A4 280 aaKnown RBP4.89□□□□□ -1.63
PRPF39-210ENST00000556718 A6NLC8 198 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 B9A039 149 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 CYP2D6P10635 497 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 SFPQP23246 707 aaKnown RBP eCLIP4.88□□□□□ -1.63
PRPF39-210ENST00000556718 KLRK1P26718 216 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 PCSK6P29122 969 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 UQCRC1P31930 480 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 PRKAA2P54646 552 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 MPP1Q00013 466 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 CLCA4Q14CN2 919 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 DLGAP5Q15398 846 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 BTBD16Q32M84 506 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 KLHL22Q53GT1 634 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 CEP78Q5JTW2 689 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 ZNF569Q5MCW4 686 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 DEPDC1Q5TB30 811 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 SLC2A7Q6PXP3 512 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 RAB11FIP4Q86YS3 637 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 HERC6Q8IVU3 1022 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 OR1N1Q8NGS0 311 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 CEP70Q8NHQ1 597 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 DENND1AQ8TEH3 1009 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 HERVK_113Q902F9 699 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 RILPL2Q969X0 211 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 FAM136AQ96C01 138 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 SEMA4CQ9C0C4 833 aa4.88□□□□□ -1.63
PRPF39-210ENST00000556718 SPRTNQ9H040 489 aaPredicted RBP4.88□□□□□ -1.63
PRPF39-210ENST00000556718 TISP43B9A030 160 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 E7EVH7 732 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 PSMD9O00233 223 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 PPP6R2O75170 966 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 KRT38O76015 456 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 LARGE1O95461 756 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 CSF1RP07333 972 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 SERPINA4P29622 427 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 NTSR1P30989 418 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 GSTM5P46439 218 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 PDE1CQ14123 709 aaPredicted RBP4.87□□□□□ -1.63
PRPF39-210ENST00000556718 GRM4Q14833 912 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 TRIM60Q495X7 471 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 AWAT2Q6E213 333 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 SLC18B1Q6NT16 456 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 FAM180BQ6P0A1 224 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 CLEC9AQ6UXN8 241 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 C4orf50Q6ZRC1 276 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 ABRAQ8N0Z2 381 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 PCYOX1LQ8NBM8 494 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 CSGALNACT1Q8TDX6 532 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 HMGB4Q8WW32 186 aa4.87□□□□□ -1.63
PRPF39-210ENST00000556718 REPS1Q96D71 796 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms