RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 ZBTB32Q9Y2Y4 487 aaPredicted RBP18.67■□□□□ 0.58
CLSTN3-214ENST00000542663 SETXQ7Z333 2677 aaKnown RBP18.67■□□□□ 0.58
CLSTN3-214ENST00000542663 FAM149AA5PLN7 773 aa18.66■□□□□ 0.58
CLSTN3-214ENST00000542663 KIF20AO95235 890 aa18.66■□□□□ 0.58
CLSTN3-214ENST00000542663 NR3C1P04150 777 aa18.66■□□□□ 0.58
CLSTN3-214ENST00000542663 CD58P19256 250 aa18.66■□□□□ 0.58
CLSTN3-214ENST00000542663 PTPRNQ16849 979 aa18.66■□□□□ 0.58
CLSTN3-214ENST00000542663 LAYNQ6UX15 382 aa18.66■□□□□ 0.58
CLSTN3-214ENST00000542663 GALNT15Q8N3T1 639 aa18.66■□□□□ 0.58
CLSTN3-214ENST00000542663 OR2T3Q8NH03 318 aa18.66■□□□□ 0.58
CLSTN3-214ENST00000542663 CDK5RAP1Q96SZ6 601 aaKnown RBP18.66■□□□□ 0.58
CLSTN3-214ENST00000542663 SLC2A11Q9BYW1 496 aa18.66■□□□□ 0.58
CLSTN3-214ENST00000542663 CYP3A43Q9HB55 503 aa18.66■□□□□ 0.58
CLSTN3-214ENST00000542663 TM9SF3Q9HD45 589 aa18.66■□□□□ 0.58
CLSTN3-214ENST00000542663 ANKRD6Q9Y2G4 727 aa18.66■□□□□ 0.58
CLSTN3-214ENST00000542663 A0A087WV48 116 aa18.65■□□□□ 0.58
CLSTN3-214ENST00000542663 PDXKO00764 312 aa18.65■□□□□ 0.58
CLSTN3-214ENST00000542663 KCNK3O14649 394 aa18.65■□□□□ 0.58
CLSTN3-214ENST00000542663 CYBBP04839 570 aa18.65■□□□□ 0.58
CLSTN3-214ENST00000542663 TRIM21P19474 475 aaKnown RBP18.65■□□□□ 0.58
CLSTN3-214ENST00000542663 HOXD9P28356 352 aaPredicted RBP18.65■□□□□ 0.58
CLSTN3-214ENST00000542663 GRIA4P48058 902 aa18.65■□□□□ 0.58
CLSTN3-214ENST00000542663 SMAD1Q15797 465 aaKnown RBP18.65■□□□□ 0.58
CLSTN3-214ENST00000542663 KCNT1Q5JUK3 1230 aa18.65■□□□□ 0.58
CLSTN3-214ENST00000542663 ZNF366Q8N895 744 aa18.65■□□□□ 0.58
CLSTN3-214ENST00000542663 TAS1R2Q8TE23 839 aa18.65■□□□□ 0.58
CLSTN3-214ENST00000542663 DDI1Q8WTU0 396 aa18.65■□□□□ 0.58
CLSTN3-214ENST00000542663 ZNF396Q96N95 335 aaPredicted RBP18.65■□□□□ 0.58
CLSTN3-214ENST00000542663 LHX5Q9H2C1 402 aa18.65■□□□□ 0.58
CLSTN3-214ENST00000542663 TMEM245Q9H330 911 aa18.65■□□□□ 0.58
CLSTN3-214ENST00000542663 OSGEPQ9NPF4 335 aa18.65■□□□□ 0.58
CLSTN3-214ENST00000542663 MARCH2Q9P0N8 246 aa18.65■□□□□ 0.58
CLSTN3-214ENST00000542663 DOCK9Q9BZ29 2069 aa18.64■□□□□ 0.57
CLSTN3-214ENST00000542663 KNTC1P50748 2209 aa18.64■□□□□ 0.57
CLSTN3-214ENST00000542663 ASXL3Q9C0F0 2248 aa18.64■□□□□ 0.57
CLSTN3-214ENST00000542663 TNFSF14O43557 240 aa18.64■□□□□ 0.57
CLSTN3-214ENST00000542663 HLA-FP30511 346 aa18.64■□□□□ 0.57
CLSTN3-214ENST00000542663 SUZ12Q15022 739 aaKnown RBP18.64■□□□□ 0.57
CLSTN3-214ENST00000542663 E2F5Q15329 346 aa18.64■□□□□ 0.57
CLSTN3-214ENST00000542663 RAB41Q5JT25 222 aa18.64■□□□□ 0.57
CLSTN3-214ENST00000542663 RESP18Q5W5W9 173 aa18.64■□□□□ 0.57
CLSTN3-214ENST00000542663 CEP135Q66GS9 1140 aa18.64■□□□□ 0.57
CLSTN3-214ENST00000542663 SCUBE3Q8IX30 993 aa18.64■□□□□ 0.57
CLSTN3-214ENST00000542663 IGSF8Q969P0 613 aa18.64■□□□□ 0.57
CLSTN3-214ENST00000542663 BIRC7Q96CA5 298 aa18.64■□□□□ 0.57
CLSTN3-214ENST00000542663 ORAI3Q9BRQ5 295 aa18.64■□□□□ 0.57
CLSTN3-214ENST00000542663 NIF3L1Q9GZT8 377 aa18.64■□□□□ 0.57
CLSTN3-214ENST00000542663 PCDHA7Q9UN72 937 aa18.64■□□□□ 0.57
CLSTN3-214ENST00000542663 HELZ2Q9BYK8 2649 aaKnown RBP18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 SLC12A8A0AV02 714 aa18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 H0Y8X5 98 aa18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 TIMM44O43615 452 aa18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 PCDHGA12O60330 932 aa18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 TSPAN3O60637 253 aa18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 TRIM49P0CI25 452 aa18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 TRIM49CP0CI26 452 aa18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 GRK6P43250 576 aa18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 GCLMP48507 274 aa18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 VAMP7P51809 220 aa18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 YWHAGP61981 247 aaKnown RBP eCLIP18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 PPP3CAQ08209 521 aa18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 KMT5BQ4FZB7 885 aa18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 ZNF394Q53GI3 561 aa18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 BHLHA9Q7RTU4 235 aa18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 ZC3H3Q8IXZ2 948 aaKnown RBP18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 CYB5D2Q8WUJ1 264 aa18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 PLD4Q96BZ4 506 aa18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 IMPG2Q9BZV3 1241 aa18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 SERTAD1Q9UHV2 236 aa18.63■□□□□ 0.57
CLSTN3-214ENST00000542663 ACTN4O43707 911 aaKnown RBP18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 SEMA4FO95754 770 aa18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 CTSKP43235 329 aa18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 CCT8P50990 548 aa18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 RPS14P62263 151 aaKnown RBP18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 ARID5AQ03989 594 aa18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 TEAD4Q15561 434 aa18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 TRIP4Q15650 581 aaPredicted RBP18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 MPPE1Q53F39 396 aa18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 DHRS13Q6UX07 377 aa18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 KIAA0907Q7Z7F0 614 aaPredicted RBP18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 ADIPOR2Q86V24 386 aa18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 PIGZQ86VD9 579 aa18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 PDCD7Q8N8D1 485 aaKnown RBP18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 ARID3AQ99856 593 aa18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 PRSS16Q9NQE7 514 aa18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 EXOC1Q9NV70 894 aa18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 STRIP2Q9ULQ0 834 aa18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 FRMD4BQ9Y2L6 1034 aa18.62■□□□□ 0.57
CLSTN3-214ENST00000542663 MAPK13O15264 365 aa18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 PAPSS1O43252 624 aaPredicted RBP18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 ZIC2O95409 532 aaPredicted RBP18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 SLFN14P0C7P3 912 aa18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 CD27P26842 260 aa18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 IL9RQ01113 521 aa18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 FNDC3BQ53EP0 1204 aaKnown RBP18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 CCDC157Q569K6 752 aa18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 CHST9Q7L1S5 443 aa18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 RSRC2Q7L4I2 434 aaKnown RBP18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 ARHGAP18Q8N392 663 aa18.61■□□□□ 0.57
CLSTN3-214ENST00000542663 SLC4A11Q8NBS3 891 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms