RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 CSHL1Q14406 222 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 TAB1Q15750 504 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 PDPK2PQ6A1A2 396 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 POMGNT2Q8NAT1 580 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 FLCNQ8NFG4 579 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 SPIRE2Q8WWL2 714 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 ATG4AQ8WYN0 398 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 BHMTQ93088 406 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 L3MBTL3Q96JM7 780 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-209ENST00000537178 APOL4Q9BPW4 351 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 NUDT12Q9BQG2 462 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 CCDC3Q9BQI4 270 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 PLA2G12BQ9BX93 195 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 TMEM120AQ9BXJ8 343 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 SLITRK2Q9H156 845 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 TPRKBQ9Y3C4 175 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 PSMD12O00232 456 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-209ENST00000537178 IFRD1O00458 451 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-209ENST00000537178 PDE9AO76083 593 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 JCHAINP01591 159 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 CCNG1P51959 295 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 RABL6Q3YEC7 729 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-209ENST00000537178 MTDHQ86UE4 582 aaKnown RBP10.91□□□□□ -0.66
CLIP1-209ENST00000537178 EID3Q8N140 333 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 FAM172AQ8WUF8 416 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 RORBQ92753 470 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 JMJD4Q9H9V9 463 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 TMBIM4Q9HC24 238 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 TCF7L2Q9NQB0 619 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 VPS28Q9UK41 221 aa10.91□□□□□ -0.66
CLIP1-209ENST00000537178 ASNA1O43681 348 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 LDLRP01130 860 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 IL6P05231 212 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 RHOCP08134 193 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 RASA1P20936 1047 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 PRKAA2P54646 552 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 R3HDM1Q15032 1099 aaKnown RBP10.9□□□□□ -0.66
CLIP1-209ENST00000537178 SPANXN2Q5MJ10 180 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 RNF180Q86T96 592 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 KRT73Q86Y46 540 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 TDRD5Q8NAT2 981 aaKnown RBP10.9□□□□□ -0.66
CLIP1-209ENST00000537178 ENKURQ8TC29 256 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 NMD3Q96D46 503 aaKnown RBP10.9□□□□□ -0.66
CLIP1-209ENST00000537178 CDC42EP4Q9H3Q1 356 aaKnown RBP10.9□□□□□ -0.66
CLIP1-209ENST00000537178 TBC1D13Q9NVG8 400 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 MRPL39Q9NYK5 338 aaKnown RBP10.9□□□□□ -0.66
CLIP1-209ENST00000537178 ZNF70Q9UC06 446 aaPredicted RBP10.9□□□□□ -0.66
CLIP1-209ENST00000537178 GPR182O15218 404 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 TEX28O15482 410 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 CLOCKO15516 846 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 SMNDC1O75940 238 aaKnown RBP eCLIP10.9□□□□□ -0.66
CLIP1-209ENST00000537178 ABCB1P08183 1280 aaPredicted RBP10.9□□□□□ -0.66
CLIP1-209ENST00000537178 PCNAP12004 261 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 FDPSP14324 419 aaKnown RBP10.9□□□□□ -0.66
CLIP1-209ENST00000537178 DSG3P32926 999 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 SNX30Q5VWJ9 437 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 GJB7Q6PEY0 223 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 ILDR2Q71H61 639 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 UXS1Q8NBZ7 420 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 MIEF2Q96C03 454 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 ARHGAP28Q9P2N2 729 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 SPATA31A3Q5VYP0 1347 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 CHD4Q14839 1912 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 CYP7B1O75881 506 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 KLK7P49862 253 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 CCNG2Q16589 344 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 ERO1BQ86YB8 467 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 TMPRSS6Q8IU80 811 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 KAT2BQ92831 832 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 FICDQ9BVA6 458 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 STK39Q9UEW8 545 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 CROTQ9UKG9 612 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 AP4E1Q9UPM8 1137 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 POLR1DQ9Y2S0 133 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 AFF2P51816 1311 aa10.9□□□□□ -0.66
CLIP1-209ENST00000537178 C15orf38-AP3S2A0A0A6YYH1 394 aa10.9□□□□□ -0.67
CLIP1-209ENST00000537178 LSM8O95777 96 aaKnown RBP10.9□□□□□ -0.67
CLIP1-209ENST00000537178 RPLP2P05387 115 aaKnown RBP10.9□□□□□ -0.67
CLIP1-209ENST00000537178 CETPP11597 493 aa10.9□□□□□ -0.67
CLIP1-209ENST00000537178 SLC2A4P14672 509 aa10.9□□□□□ -0.67
CLIP1-209ENST00000537178 MYL12AP19105 171 aa10.9□□□□□ -0.67
CLIP1-209ENST00000537178 KPNA1P52294 538 aaPredicted RBP10.9□□□□□ -0.67
CLIP1-209ENST00000537178 NFE2Q16621 373 aaPredicted RBP10.9□□□□□ -0.67
CLIP1-209ENST00000537178 ZNF57Q68EA5 555 aaPredicted RBP10.9□□□□□ -0.67
CLIP1-209ENST00000537178 ARPINQ7Z6K5 226 aa10.9□□□□□ -0.67
CLIP1-209ENST00000537178 ACOT1Q86TX2 421 aa10.9□□□□□ -0.67
CLIP1-209ENST00000537178 DEFB107AQ8IZN7 70 aa10.9□□□□□ -0.67
CLIP1-209ENST00000537178 ZNF512BQ96KM6 892 aaPredicted RBP10.9□□□□□ -0.67
CLIP1-209ENST00000537178 ACOX2Q99424 681 aa10.9□□□□□ -0.67
CLIP1-209ENST00000537178 EPB41L4BQ9H329 900 aa10.9□□□□□ -0.67
CLIP1-209ENST00000537178 DAPK2Q9UIK4 370 aa10.9□□□□□ -0.67
CLIP1-209ENST00000537178 DSEQ9UL01 958 aa10.9□□□□□ -0.67
CLIP1-209ENST00000537178 C17orf102A2RUQ5 167 aa10.89□□□□□ -0.67
CLIP1-209ENST00000537178 PPP1R3GB7ZBB8 358 aa10.89□□□□□ -0.67
CLIP1-209ENST00000537178 PHGDHO43175 533 aaKnown RBP10.89□□□□□ -0.67
CLIP1-209ENST00000537178 MTRF1O75570 445 aaKnown RBP10.89□□□□□ -0.67
CLIP1-209ENST00000537178 PROSCO94903 275 aa10.89□□□□□ -0.67
CLIP1-209ENST00000537178 CAPN1P07384 714 aa10.89□□□□□ -0.67
CLIP1-209ENST00000537178 TCF7P36402 384 aaPredicted RBP10.89□□□□□ -0.67
CLIP1-209ENST00000537178 ZNF157P51786 506 aaPredicted RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms