RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 ELMO3Q96BJ8 720 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 SMOQ99835 787 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 BBS2Q9BXC9 721 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 NT5C1AQ9BXI3 368 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 NIF3L1Q9GZT8 377 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 SLC6A17Q9H1V8 727 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 PRORYQ9H606 182 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 APOBEC3GQ9HC16 384 aaKnown RBP11.07□□□□□ -0.64
CPSF1-203ENST00000527916 CHORDC1Q9UHD1 332 aaPredicted RBP11.07□□□□□ -0.64
CPSF1-203ENST00000527916 PCDHA5Q9Y5H7 936 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 RAD54BQ9Y620 910 aa11.07□□□□□ -0.64
CPSF1-203ENST00000527916 METTL12A8MUP2 240 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 NEDD8-MDP1E9PL57 170 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 J3QKU1 62 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 NPC1O15118 1278 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 TRIM24O15164 1050 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 SLC16A3O15427 465 aaKnown RBP11.06□□□□□ -0.64
CPSF1-203ENST00000527916 CACNG3O60359 315 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 BEST1O76090 585 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 CLSTN1O94985 981 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 FAM200BP0CF97 657 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 TRIM49P0CI25 452 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 TRIM49CP0CI26 452 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 TYRP14679 529 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 HNF1BP35680 557 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 PPP1R2P41236 205 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 AFF3P51826 1226 aaKnown RBP11.06□□□□□ -0.64
CPSF1-203ENST00000527916 LRRC63Q05C16 580 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 E2F5Q15329 346 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 TEAD4Q15561 434 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 C6orf118Q5T5N4 469 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 TMPRSS12Q86WS5 348 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 SMYD4Q8IYR2 804 aaPredicted RBP11.06□□□□□ -0.64
CPSF1-203ENST00000527916 C12orf29Q8N999 325 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 FBXL13Q8NEE6 735 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 SLC2A14Q8TDB8 520 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 BAP1Q92560 729 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 SMARCE1Q969G3 411 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 CYFIP2Q96F07 1278 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 ZFRQ96KR1 1074 aaKnown RBP11.06□□□□□ -0.64
CPSF1-203ENST00000527916 FCRL3Q96P31 734 aaPredicted RBP11.06□□□□□ -0.64
CPSF1-203ENST00000527916 TSG101Q99816 390 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 NUP58Q9BVL2 599 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 CD93Q9NPY3 652 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 ITM2CQ9NQX7 267 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.06□□□□□ -0.64
CPSF1-203ENST00000527916 KRT82Q9NSB4 513 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 RAB20Q9NX57 234 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 USP36Q9P275 1121 aaKnown RBP11.06□□□□□ -0.64
CPSF1-203ENST00000527916 HMGXB4Q9UGU5 601 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.06□□□□□ -0.64
CPSF1-203ENST00000527916 COQ4Q9Y3A0 265 aa11.06□□□□□ -0.64
CPSF1-203ENST00000527916 TEX51A0A1B0GUA7 166 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 PRRT4C9JH25 899 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 HHLA1C9JL84 531 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 SYNCRIPO60506 623 aaKnown RBP11.05□□□□□ -0.64
CPSF1-203ENST00000527916 IRF1P10914 325 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 ACADMP11310 421 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 CCDC130P13994 396 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 ITPKBP27987 946 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 EIF2S3P41091 472 aaKnown RBP11.05□□□□□ -0.64
CPSF1-203ENST00000527916 DGKGP49619 791 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 MXI1P50539 228 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 MAP3K7CLP57077 242 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 GOLGA8FQ08AF8 430 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 GOLGA8DPQ0D2H9 430 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 PTPRNQ16849 979 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 FUT11Q495W5 492 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 ANKRD40Q6AI12 368 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 FOXR2Q6PJQ5 311 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 CLEC20AQ6ZU45 233 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 ZNF276Q8N554 614 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 SEMA4DQ92854 862 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 SIPA1Q96FS4 1042 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 DHTKD1Q96HY7 919 aaPredicted RBP11.05□□□□□ -0.64
CPSF1-203ENST00000527916 TWNKQ96RR1 684 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 UBXN6Q9BZV1 441 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 PCED1AQ9H1Q7 454 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 TLR8Q9NR97 1041 aaKnown RBP11.05□□□□□ -0.64
CPSF1-203ENST00000527916 EIF2B4Q9UI10 523 aaKnown RBP11.05□□□□□ -0.64
CPSF1-203ENST00000527916 LSM7Q9UK45 103 aaKnown RBP11.05□□□□□ -0.64
CPSF1-203ENST00000527916 SCML2Q9UQR0 700 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 BTBD3Q9Y2F9 522 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 STON1Q9Y6Q2 735 aa11.05□□□□□ -0.64
CPSF1-203ENST00000527916 A0A1B0GVT2 93 aa11.04□□□□□ -0.64
CPSF1-203ENST00000527916 PLK4O00444 970 aa11.04□□□□□ -0.64
CPSF1-203ENST00000527916 PMM2O15305 246 aa11.04□□□□□ -0.64
CPSF1-203ENST00000527916 PCDHGA12O60330 932 aa11.04□□□□□ -0.64
CPSF1-203ENST00000527916 CDK4P11802 303 aa11.04□□□□□ -0.64
CPSF1-203ENST00000527916 JUPP14923 745 aa11.04□□□□□ -0.64
CPSF1-203ENST00000527916 CSNK1EP49674 416 aaKnown RBP11.04□□□□□ -0.64
CPSF1-203ENST00000527916 TPMTP51580 245 aa11.04□□□□□ -0.64
CPSF1-203ENST00000527916 PMS1P54277 932 aaKnown RBP11.04□□□□□ -0.64
CPSF1-203ENST00000527916 BNC1Q01954 994 aa11.04□□□□□ -0.64
CPSF1-203ENST00000527916 SEMG2Q02383 582 aa11.04□□□□□ -0.64
CPSF1-203ENST00000527916 ORC1Q13415 861 aa11.04□□□□□ -0.64
CPSF1-203ENST00000527916 STIM1Q13586 685 aa11.04□□□□□ -0.64
CPSF1-203ENST00000527916 KLHDC10Q6PID8 442 aa11.04□□□□□ -0.64
CPSF1-203ENST00000527916 DHRS13Q6UX07 377 aa11.04□□□□□ -0.64
CPSF1-203ENST00000527916 HTR3DQ70Z44 454 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms