RNA–Protein interactions for RNA: ENST00000527299.1

CLNS1A-209, Transcript of chloride nucleotide-sensitive channel 1A, human

TSL 2

Gene CLNS1A, Length 387 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLNS1A-209	ENST00000527299	SEC63	Q9UGP8	760 aa	Known RBP	3.91	□□□□□ -1.78
CLNS1A-209	ENST00000527299	DDX19B	Q9UMR2	479 aa		3.91	□□□□□ -1.78
CLNS1A-209	ENST00000527299	TRAF3IP3	Q9Y228	551 aa		3.91	□□□□□ -1.78
CLNS1A-209	ENST00000527299	MRPL11	Q9Y3B7	192 aa	Known RBP	3.91	□□□□□ -1.78
CLNS1A-209	ENST00000527299	NOX1	Q9Y5S8	564 aa		3.91	□□□□□ -1.78
CLNS1A-209	ENST00000527299	USP16	Q9Y5T5	823 aa		3.91	□□□□□ -1.78
CLNS1A-209	ENST00000527299	MAST3	O60307	1309 aa		3.91	□□□□□ -1.78
CLNS1A-209	ENST00000527299	UGGT2	Q9NYU1	1516 aa		3.9	□□□□□ -1.78
CLNS1A-209	ENST00000527299	ARHGEF12	Q9NZN5	1544 aa		3.9	□□□□□ -1.78
CLNS1A-209	ENST00000527299	CLRN2	A0PK11	232 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CTAGE15	A4D2H0	777 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	MAGEA13P	A6NCF6	341 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	UNC119B	A6NIH7	251 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CCDC169	A6NNP5	214 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TMEM114	B3SHH9	223 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	AKR1B15	C9JRZ8	316 aa	Predicted RBP	3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CETN3	O15182	167 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	YKT6	O15498	198 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	KCNQ2	O43526	872 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	OPHN1	O60890	802 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ALDH1A2	O94788	518 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	GNA14	O95837	355 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PAH	P00439	452 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	FGA	P02671	866 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	RPN1	P04843	607 aa	Known RBP	3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CTAGE8	P0CG41	777 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CHRNB1	P11230	501 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	NAGA	P17050	411 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	GNAZ	P19086	355 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	M6PR	P20645	277 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	DDX6	P26196	483 aa	Known RBP eCLIP	3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PCK1	P35558	622 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CENPA	P49450	140 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TMED10	P49755	219 aa	Known RBP	3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	BLVRA	P53004	296 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	RNASE9	P60153	205 aa	Known RBP	3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	GNG11	P61952	73 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	NHLH2	Q02577	135 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	RELA	Q04206	551 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	GBE1	Q04446	702 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	POU5F1B	Q06416	359 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ITGB3BP	Q13352	177 aa	Predicted RBP	3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PDCL	Q13371	301 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ITGA9	Q13797	1035 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CYLC2	Q14093	348 aa	Predicted RBP	3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	NFE2L1	Q14494	772 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	EPHA7	Q15375	998 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PPP1R7	Q15435	360 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	STX1A	Q16623	288 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	GSTA3	Q16772	222 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	MYLK3	Q32MK0	819 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	GLE1	Q53GS7	698 aa	Known RBP	3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	NAALADL2	Q58DX5	795 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ZC3H12B	Q5HYM0	836 aa	Known RBP	3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CEP78	Q5JTW2	689 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	RNF220	Q5VTB9	566 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SNX30	Q5VWJ9	437 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	FCRLB	Q6BAA4	426 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ATL3	Q6DD88	541 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PDXDC1	Q6P996	788 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	BTNL9	Q6UXG8	535 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	INTS8	Q75QN2	995 aa	Known RBP	3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CTAGE6	Q86UF2	777 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SYT12	Q8IV01	421 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CROCCP3	Q8IVE0	287 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CTAGE4	Q8IX94	777 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	UNC5B	Q8IZJ1	945 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CACNA2D3	Q8IZS8	1091 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	VPS52	Q8N1B4	723 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	AADAT	Q8N5Z0	425 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ARFGAP2	Q8N6H7	521 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PAF1	Q8N7H5	531 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	USP38	Q8NB14	1042 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CCDC148	Q8NFR7	591 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	OR7G1	Q8NGA0	311 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	FNDC8	Q8TC99	324 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TBC1D20	Q96BZ9	403 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	FAM136A	Q96C01	138 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	IQCD	Q96DY2	449 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CEP95	Q96GE4	821 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	VPS50	Q96JG6	964 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CENPK	Q9BS16	269 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	HAUS8	Q9BT25	410 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	NUF2	Q9BZD4	464 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	UNK	Q9C0B0	810 aa	Known RBP	3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	VPS16	Q9H269	839 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	MTG2	Q9H4K7	406 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	DNAJC18	Q9H819	358 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	XAB2	Q9HCS7	855 aa	Known RBP	3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TRPC7	Q9HCX4	862 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CD93	Q9NPY3	652 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CASS4	Q9NQ75	786 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	KMT5A	Q9NQR1	393 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SEMA4G	Q9NTN9	838 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ARHGEF38	Q9NXL2	777 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PTTG2	Q9NZH5	202 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	DLGAP2	Q9P1A6	1054 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	LNPEP	Q9UIQ6	1025 aa		3.9	□□□□□ -1.79
CLNS1A-209	ENST00000527299	RASAL2	Q9UJF2	1139 aa		3.9	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms