RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CAND2O75155 1236 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 ABHD16AO95870 558 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 MTHFD2P13995 350 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 IBSPP21815 317 aaPredicted RBP4.49□□□□□ -1.69
USP54-217ENST00000498213 CTSSP25774 331 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 MGAT1P26572 445 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 NOVP48745 357 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 LIMK1P53667 647 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 CCT2P78371 535 aaKnown RBP4.49□□□□□ -1.69
USP54-217ENST00000498213 KLRC3Q07444 240 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 FAPQ12884 760 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 SRSF5Q13243 272 aaKnown RBP4.49□□□□□ -1.69
USP54-217ENST00000498213 KCNC3Q14003 757 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 SIM2Q14190 667 aaPredicted RBP4.49□□□□□ -1.69
USP54-217ENST00000498213 PDCD1Q15116 288 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 TIGD2Q4W5G0 525 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 C19orf54Q5BKX5 351 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 ATAT1Q5SQI0 421 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 LY6G5CQ5SRR4 150 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 C1QL3Q5VWW1 255 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 EFCAB12Q6NXP0 572 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 DCLRE1AQ6PJP8 1040 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 ABHD15Q6UXT9 468 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.49□□□□□ -1.69
USP54-217ENST00000498213 STRA8Q7Z7C7 330 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 LYSMD2Q8IV50 215 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 ZNF444Q8N0Y2 327 aaPredicted RBP4.49□□□□□ -1.69
USP54-217ENST00000498213 TMEM57Q8N5G2 664 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 MIGA1Q8NAN2 632 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 OR52N2Q8NGI0 321 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 MDM1Q8TC05 714 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 PROKR1Q8TCW9 393 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 STAG1Q8WVM7 1258 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 AUTS2Q8WXX7 1259 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 NELL1Q92832 810 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 TTC14Q96N46 770 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 CEP89Q96ST8 783 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 CDCA3Q99618 268 aaPredicted RBP4.49□□□□□ -1.69
USP54-217ENST00000498213 CPEB1Q9BZB8 566 aaKnown RBP4.49□□□□□ -1.69
USP54-217ENST00000498213 ARHGEF3Q9NR81 526 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 MTMR4Q9NYA4 1195 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 TRPM5Q9NZQ8 1165 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 HDAC6Q9UBN7 1215 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 TRPS1Q9UHF7 1281 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 FANCMQ8IYD8 2048 aa4.49□□□□□ -1.69
USP54-217ENST00000498213 TRIP12Q14669 1992 aaPredicted RBP4.49□□□□□ -1.69
USP54-217ENST00000498213 TTC41PQ6P2S7 1318 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 WDR19Q8NEZ3 1342 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 AKR1B10O60218 316 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 TMEM127O75204 238 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 GASTP01350 101 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 ICAM1P05362 532 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 AKR1B1P15121 316 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 CD72P21854 359 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 APOBEC3AP31941 199 aaPredicted RBP4.48□□□□□ -1.69
USP54-217ENST00000498213 PTPN7P35236 360 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 GATMP50440 423 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 SCAND1P57086 179 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 ITIH3Q06033 890 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 STAT4Q14765 748 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 UBXN2BQ14CS0 331 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 PTPAQ15257 358 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 PTPN14Q15678 1187 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 SPOUT1Q5T280 376 aaKnown RBP4.48□□□□□ -1.69
USP54-217ENST00000498213 CTR9Q6PD62 1173 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 BTNL9Q6UXG8 535 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 ZNF575Q86XF7 245 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 ITPRIPQ8IWB1 547 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 SLC44A3Q8N4M1 653 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 CELF5Q8N6W0 485 aaKnown RBP4.48□□□□□ -1.69
USP54-217ENST00000498213 KBTBD3Q8NAB2 608 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 OR10H5Q8NGA6 315 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 SCFD2Q8WU76 684 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 TFAP2CQ92754 450 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 KAT2BQ92831 832 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 FRAT1Q92837 279 aaPredicted RBP4.48□□□□□ -1.69
USP54-217ENST00000498213 CASP10Q92851 521 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 DCLRE1CQ96SD1 692 aaKnown RBP4.48□□□□□ -1.69
USP54-217ENST00000498213 STRBPQ96SI9 672 aaKnown RBP4.48□□□□□ -1.69
USP54-217ENST00000498213 NDC1Q9BTX1 674 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 TTPALQ9BTX7 342 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 KATNAL1Q9BW62 490 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 LRRCC1Q9C099 1032 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 CCDC8Q9H0W5 538 aaPredicted RBP4.48□□□□□ -1.69
USP54-217ENST00000498213 ARRDC1-AS1Q9H2J1 176 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 IKZF4Q9H2S9 585 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 ECHDC1Q9NTX5 307 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 ZBTB40Q9NUA8 1239 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 TCP11L1Q9NUJ3 509 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 GPRC5BQ9NZH0 403 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 NEUROG3Q9Y4Z2 214 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 SLC4A4Q9Y6R1 1079 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 CELSR3Q9NYQ7 3312 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 FREM2Q5SZK8 3169 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 MICAL3Q7RTP6 2002 aa4.48□□□□□ -1.69
USP54-217ENST00000498213 PTPRQQ9UMZ3 2332 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 ZMYM6O95789 1325 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 FRMPD2Q68DX3 1309 aaPredicted RBP4.47□□□□□ -1.69
USP54-217ENST00000498213 MCM3APO60318 1980 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 TICRRQ7Z2Z1 1910 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms