RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 RASA4BC9J798 803 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 RASA4O43374 803 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 TAF5LO75529 589 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 FGF2P09038 288 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 EEF1GP26641 437 aaKnown RBP4.52□□□□□ -1.69
VPS41-213ENST00000485955 ME1P48163 572 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 NSUN2Q08J23 767 aaKnown RBP eCLIP4.52□□□□□ -1.69
VPS41-213ENST00000485955 MAPK7Q13164 816 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 FHL1Q13642 323 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 IL31Q6EBC2 164 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 MSANTD2Q6P1R3 559 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 FAM57BQ71RH2 274 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 OR2C3Q8N628 320 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 BCAS4Q8TDM0 211 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 ZNF566Q969W8 418 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 C18orf8Q96DM3 657 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 MCRS1Q96EZ8 462 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 ZNF845Q96IR2 970 aaPredicted RBP4.52□□□□□ -1.69
VPS41-213ENST00000485955 NUDT22Q9BRQ3 303 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 RNF26Q9BY78 433 aaPredicted RBP4.52□□□□□ -1.69
VPS41-213ENST00000485955 CDCP1Q9H5V8 836 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 MOV10Q9HCE1 1003 aaKnown RBP4.52□□□□□ -1.69
VPS41-213ENST00000485955 POT1Q9NUX5 634 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 DTNAQ9Y4J8 743 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 HS3ST3B1Q9Y662 390 aa4.52□□□□□ -1.69
VPS41-213ENST00000485955 KRTAP29-1A8MX34 341 aaPredicted RBP4.51□□□□□ -1.69
VPS41-213ENST00000485955 TTC34A8MYJ7 566 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 PROB1E7EW31 1015 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 J3KTA2 159 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 PODXLO00592 558 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 TRIM38O00635 465 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 NPC1O15118 1278 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 PSG1P11464 419 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 TNFRSF1BP20333 461 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 MATN1P21941 496 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 NEK3P51956 506 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 POLGP54098 1239 aaPredicted RBP4.51□□□□□ -1.69
VPS41-213ENST00000485955 HLTFQ14527 1009 aaKnown RBP eCLIP4.51□□□□□ -1.69
VPS41-213ENST00000485955 TWIST1Q15672 202 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 MPEG1Q2M385 716 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 IZUMO3Q5VZ72 239 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 RASGRP3Q8IV61 690 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 LAS2Q8IYD9 372 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 ARFGAP1Q8N6T3 406 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 ARL14EPQ8N8R7 260 aaPredicted RBP4.51□□□□□ -1.69
VPS41-213ENST00000485955 GLMPQ8WWB7 406 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 KIAA1191Q96A73 305 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 CCDC138Q96M89 665 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 SENP7Q9BQF6 1050 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 EIF2AQ9BY44 585 aaKnown RBP4.51□□□□□ -1.69
VPS41-213ENST00000485955 EPS8L2Q9H6S3 715 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 ZBTB40Q9NUA8 1239 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 PHTF1Q9UMS5 762 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 B3GNT3Q9Y2A9 372 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 PCDHB7Q9Y5E2 793 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 PCDHGB2Q9Y5G2 931 aa4.51□□□□□ -1.69
VPS41-213ENST00000485955 A0A1W2PPC1 479 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 ZNF814B7Z6K7 855 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 UGDHO60701 494 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 KAT7O95251 611 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 ENO1P06733 434 aaKnown RBP4.5□□□□□ -1.69
VPS41-213ENST00000485955 SLC3A2P08195 630 aaKnown RBP4.5□□□□□ -1.69
VPS41-213ENST00000485955 ITGA5P08648 1049 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 RFPL3SP0C7P2 107 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 HSPA7P48741 367 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 B4GALNT1Q00973 533 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 DMWDQ09019 674 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 GRM4Q14833 912 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 RAB30Q15771 203 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 FBXO38Q6PIJ6 1188 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 ZNF793Q6ZN11 406 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 C11orf96Q7Z7L8 435 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 RHPN2Q8IUC4 686 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 ASB12Q8WXK4 309 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 NPIPB3Q92617 1050 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 MSI2Q96DH6 328 aaKnown RBP4.5□□□□□ -1.69
VPS41-213ENST00000485955 CAMK1GQ96NX5 476 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 GPR78Q96P69 363 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 EIF3CQ99613 913 aaKnown RBP4.5□□□□□ -1.69
VPS41-213ENST00000485955 TRMOQ9BU70 441 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 TTLL2Q9BWV7 592 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 ARNT2Q9HBZ2 717 aa4.5□□□□□ -1.69
VPS41-213ENST00000485955 GEMIN8Q9NWZ8 242 aaKnown RBP4.5□□□□□ -1.69
VPS41-213ENST00000485955 SPATA31A5Q5VU36 1347 aa4.49□□□□□ -1.69
VPS41-213ENST00000485955 SPATA31A7Q8IWB4 1347 aa4.49□□□□□ -1.69
VPS41-213ENST00000485955 TRBV5-3A0A0A0MS03 114 aa4.49□□□□□ -1.69
VPS41-213ENST00000485955 PNMA6EA0A0J9YXQ4 647 aa4.49□□□□□ -1.69
VPS41-213ENST00000485955 MYMKA6NI61 221 aa4.49□□□□□ -1.69
VPS41-213ENST00000485955 CD8B2A6NJW9 211 aa4.49□□□□□ -1.69
VPS41-213ENST00000485955 M0QYT0 321 aa4.49□□□□□ -1.69
VPS41-213ENST00000485955 PCDH17O14917 1159 aa4.49□□□□□ -1.69
VPS41-213ENST00000485955 NTSR2O95665 410 aa4.49□□□□□ -1.69
VPS41-213ENST00000485955 PEPDP12955 493 aa4.49□□□□□ -1.69
VPS41-213ENST00000485955 SLC8A1P32418 973 aa4.49□□□□□ -1.69
VPS41-213ENST00000485955 AK2P54819 239 aa4.49□□□□□ -1.69
VPS41-213ENST00000485955 SLC12A2P55011 1212 aa4.49□□□□□ -1.69
VPS41-213ENST00000485955 DHRS13Q6UX07 377 aa4.49□□□□□ -1.69
VPS41-213ENST00000485955 COLCA1Q6ZS62 124 aa4.49□□□□□ -1.69
VPS41-213ENST00000485955 BHLHA9Q7RTU4 235 aa4.49□□□□□ -1.69
VPS41-213ENST00000485955 KRT27Q7Z3Y8 459 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms