RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 AGAP9Q5VTM2 703 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 LILRA6Q6PI73 481 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 GPD1LQ8N335 351 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 IGSF21Q96ID5 467 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 CPB2Q96IY4 423 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 MPP4Q96JB8 637 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 MSLNLQ96KJ4 702 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 SUSD3Q96L08 255 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 CGRRF1Q99675 332 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 KIFC3Q9BVG8 833 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 BCO2Q9BYV7 579 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 BMP2KQ9NSY1 1161 aaPredicted RBP7.95□□□□□ -1.14
USP4-211ENST00000485450 NDUFA13Q9P0J0 144 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 ZNF212Q9UDV6 495 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 PIN4Q9Y237 131 aaKnown RBP7.95□□□□□ -1.14
USP4-211ENST00000485450 ZNF711Q9Y462 761 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 NUMBLQ9Y6R0 609 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 MYO16Q9Y6X6 1858 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 MEIS3P2A8K0S8 358 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 K7ENM7 598 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 FBP2O00757 339 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 CDK2AP1O14519 115 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 TEX28O15482 410 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 MTRF1O75570 445 aaKnown RBP7.95□□□□□ -1.14
USP4-211ENST00000485450 OR6B1O95007 311 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 PIM1P11309 404 aaPredicted RBP7.95□□□□□ -1.14
USP4-211ENST00000485450 PRKCIP41743 596 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 RPL34P49207 117 aaKnown RBP7.95□□□□□ -1.14
USP4-211ENST00000485450 CD300CQ08708 224 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 LRRC14Q15048 493 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 FRMD5Q7Z6J6 570 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 MAP7D3Q8IWC1 876 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 MYCT1Q8N699 235 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 ERP27Q96DN0 273 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 TARS2Q9BW92 718 aaKnown RBP7.95□□□□□ -1.14
USP4-211ENST00000485450 XYLT2Q9H1B5 865 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 KRT82Q9NSB4 513 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 STX18Q9P2W9 335 aaKnown RBP7.95□□□□□ -1.14
USP4-211ENST00000485450 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.95□□□□□ -1.14
USP4-211ENST00000485450 BICDL2A1A5D9 508 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 CFAP69A5D8W1 941 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 VILLO15195 856 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 CTSAP10619 480 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 ITGA4P13612 1032 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 CCNE1P24864 410 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 ATICP31939 592 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 SOX4Q06945 474 aaPredicted RBP7.95□□□□□ -1.14
USP4-211ENST00000485450 INAQ16352 499 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 DCLRE1AQ6PJP8 1040 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 ST13P4Q8IZP2 240 aaPredicted RBP7.95□□□□□ -1.14
USP4-211ENST00000485450 RIBC1Q8N443 379 aaPredicted RBP7.95□□□□□ -1.14
USP4-211ENST00000485450 DCLK2Q8N568 766 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 TCHPQ9BT92 498 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 FAM207AQ9NSI2 230 aaPredicted RBP7.95□□□□□ -1.14
USP4-211ENST00000485450 SIX4Q9UIU6 781 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 CHKBQ9Y259 395 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 ZNF638Q14966 1978 aaKnown RBP7.95□□□□□ -1.14
USP4-211ENST00000485450 PTPRJQ12913 1337 aa7.95□□□□□ -1.14
USP4-211ENST00000485450 KIAA0100Q14667 2235 aaKnown RBP7.94□□□□□ -1.14
USP4-211ENST00000485450 TMEM120BA0PK00 339 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 LRRIQ4A6NIV6 560 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 TRIM64CA6NLI5 447 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 HNRNPCL1O60812 293 aaKnown RBP7.94□□□□□ -1.14
USP4-211ENST00000485450 RECQL4O94761 1208 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 SOD2P04179 222 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 ITGB1P05556 798 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 SRGAP2CP0DJJ0 459 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 PTPN4P29074 926 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 SERPINB3P29508 390 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 RCVRNP35243 200 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 STRN3Q13033 797 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 DUPD1Q68J44 220 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 GRAMD4Q6IC98 578 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 SLC8B1Q6J4K2 584 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 VSTM1Q6UX27 236 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 CCBE1Q6UXH8 406 aaPredicted RBP7.94□□□□□ -1.14
USP4-211ENST00000485450 DPH6Q7L8W6 267 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 DEFB128Q7Z7B8 93 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.94□□□□□ -1.14
USP4-211ENST00000485450 HACE1Q8IYU2 909 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 EPS8L3Q8TE67 593 aaKnown RBP7.94□□□□□ -1.14
USP4-211ENST00000485450 SYN2Q92777 582 aaPredicted RBP7.94□□□□□ -1.14
USP4-211ENST00000485450 MAGEB18Q96M61 343 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 NEURL2Q9BR09 285 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 HSPBP1Q9NZL4 362 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 PCDHB8Q9UN66 801 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 ARHGEF37A1IGU5 675 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 SMIM23A6NLE4 172 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 CAPN9O14815 690 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 RASGRF2O14827 1237 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 KDM1AO60341 852 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 TBX10O75333 385 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 ABLIM3O94929 683 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 PSMG1O95456 288 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 FGFR4P22455 802 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 ACADSBP45954 432 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 BCAR1P56945 870 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 PDE1BQ01064 536 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 INCA1Q0VD86 236 aa7.94□□□□□ -1.14
USP4-211ENST00000485450 CYLC2Q14093 348 aaPredicted RBP7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms