RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ST7Q9NRC1 585 aa16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 TMEM74BQ9NUR3 256 aa16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 CLEC4EQ9ULY5 219 aa16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 SLC27A6Q9Y2P4 619 aa16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 C1QTNF9BB2RNN3 333 aa16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 WASH3PC4AMC7 463 aa16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 LETM1O95202 739 aaPredicted RBP16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 TOP3BO95985 862 aaKnown RBP16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 C1QTNF9P0C862 333 aa16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 NDUFV2P19404 249 aa16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 SPINK2P20155 84 aa16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 MTIF2P46199 727 aaKnown RBP16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 FOXC1Q12948 553 aa16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 ARHGAP44Q17R89 818 aa16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 UAP1L1Q3KQV9 507 aa16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 MSANTD2Q6P1R3 559 aa16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 DENND1BQ6P3S1 775 aa16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 FAM217AQ8IXS0 508 aa16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 GABRG3Q99928 467 aa16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 SLC6A17Q9H1V8 727 aa16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 CLSTN2Q9H4D0 955 aa16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 STON1Q9Y6Q2 735 aa16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 ATXN2Q99700 1313 aaKnown RBP16.39■□□□□ 0.21
CCDC88B-205ENST00000472524 THAP12O43422 761 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 FBXO21O94952 628 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 SLC9A1P19634 815 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 HOXD9P28356 352 aaPredicted RBP16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 GNA15P30679 374 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 USP8P40818 1118 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 APBA1Q02410 837 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 MPPE1Q53F39 396 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 TRIM61Q5EBN2 209 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 TRIM65Q6PJ69 517 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 GBP6Q6ZN66 633 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 DEFB119Q8N690 84 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 MLKLQ8NB16 471 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 UCMAQ8WVF2 138 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 PIWIL1Q96J94 861 aaKnown RBP16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 CIPCQ9C0C6 399 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 CD248Q9HCU0 757 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 ACP6Q9NPH0 428 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 EVLQ9UI08 416 aaPredicted RBP16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 RALYQ9UKM9 306 aaKnown RBP16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 CYP8B1Q9UNU6 501 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 WASF3Q9UPY6 502 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 CNTN6Q9UQ52 1028 aa16.38■□□□□ 0.21
CCDC88B-205ENST00000472524 NUMA1Q14980 2115 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 MUC22E2RYF6 1773 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 GFRA2O00451 464 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 MED7O43513 233 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 PROS1P07225 676 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 NCAM1P13591 858 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 CEACAM1P13688 526 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 CSRP1P21291 193 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 IL12RB1P42701 662 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 GPD2P43304 727 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 MAPK8P45983 427 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 TBX4P57082 545 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 RPL6Q02878 288 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 EXOC3L4Q17RC7 722 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 KIAA1324Q6UXG2 1013 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 ENOSF1Q7L5Y1 443 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 IRF2BP1Q8IU81 584 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 SCUBE3Q8IX30 993 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 DEFB124Q8NES8 71 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 SORCS1Q8WY21 1168 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 FAM149B1Q96BN6 582 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 CD93Q9NPY3 652 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 FSCN3Q9NQT6 498 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 THAP10Q9P2Z0 257 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 CHD6Q8TD26 2715 aa16.37■□□□□ 0.21
CCDC88B-205ENST00000472524 ASPMQ8IZT6 3477 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 IGHV1OR15-9A0A0B4J2B8 117 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 LATS1O95835 1130 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 ENGP17813 658 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 ITPKAP23677 461 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 ANP32AP39687 249 aaKnown RBP16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 ACADSBP45954 432 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 SGSHP51688 502 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 ZNF445P59923 1031 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 ARID5AQ03989 594 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 ZNF234Q14588 700 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 STARD3Q14849 445 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 ADGRF1Q5T601 910 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 LYSMD4Q5XG99 296 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 RFWD3Q6PCD5 774 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 UNQ6494/PRO21346Q6UXR6 183 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 SLC36A4Q6YBV0 504 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 SYT12Q8IV01 421 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 ZNF606Q8WXB4 792 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 TMA16Q96EY4 203 aaKnown RBP16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 NUSAP1Q9BXS6 441 aaKnown RBP16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 SLC2A11Q9BYW1 496 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 ELOVL2Q9NXB9 296 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 APEX2Q9UBZ4 518 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 STOML2Q9UJZ1 356 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 PILRBQ9UKJ0 227 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 NAALADL1Q9UQQ1 740 aa16.36■□□□□ 0.21
CCDC88B-205ENST00000472524 GOLGA6L7A0A1B0GV03 622 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 BECN2A8MW95 431 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms