RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 HSP90AA5PQ58FG0 334 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 NUDCD3Q8IVD9 361 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 CDKL3Q8IVW4 592 aaPredicted RBP14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 SMG8Q8ND04 991 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 GLT1D1Q96MS3 346 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 LRRC37BQ96QE4 947 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 MTG1Q9BT17 334 aaPredicted RBP14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 CAB39LQ9H9S4 337 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 VANGL2Q9ULK5 521 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 COMMD10Q9Y6G5 202 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 CLUHO75153 1309 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 LOC100653049A0A140TA62 436 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 KRT34O76011 436 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 ZNF865P0CJ78 1059 aaPredicted RBP14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 RPL17P18621 184 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 NCF2P19878 526 aaPredicted RBP14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 ALDH18A1P54886 795 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 FCGRTP55899 365 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 SARNPP82979 210 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 PPM1JQ5JR12 505 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 CFAP157Q5JU67 520 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 MTDHQ86UE4 582 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 CIR1Q86X95 450 aaPredicted RBP14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 IFNL1Q8IU54 200 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 MSL3Q8N5Y2 521 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 SPATA22Q8NHS9 363 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 SLC35F5Q8WV83 523 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 HTR3CQ8WXA8 447 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 FBXO6Q9NRD1 293 aaPredicted RBP14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 ZNF358Q9NW07 568 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 PACSIN3Q9UKS6 424 aa14.18□□□□□ -0.14
CCDC88A-211ENST00000471947 SMIM35A0A1B0GVV1 85 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 PTGESO14684 152 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 ITGAVP06756 1048 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 STIP1P31948 543 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 PURAQ00577 322 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 CHI3L2Q15782 390 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 OTOP3Q7RTS5 596 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 RASSF3Q86WH2 238 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 PQLC3Q8N755 202 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 C12orf50Q8NA57 414 aaPredicted RBP14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 CD99L2Q8TCZ2 262 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 ATXN2LQ8WWM7 1075 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 CYP4F11Q9HBI6 524 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 TRIP12Q14669 1992 aaPredicted RBP14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 GABBR2O75899 941 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 SOX11P35716 441 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 CRYBB1P53674 252 aaPredicted RBP14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 GEN1Q17RS7 908 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 ANKRD20A2Q5SQ80 823 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 ANKRD20A1Q5TYW2 823 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 FAM35AQ86V20 835 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 TNS4Q8IZW8 715 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 DTX3LQ8TDB6 740 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 KBTBD7Q8WVZ9 684 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 P2RY11Q96G91 374 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 PRDM5Q9NQX1 630 aaPredicted RBP14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 SMPD4Q9NXE4 827 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 OR12D3Q9UGF7 316 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 SHOC2Q9UQ13 582 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 TP73O15350 636 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 NOMO1Q15155 1222 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 KLHL38Q2WGJ6 581 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 ARL13BQ3SXY8 428 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 LGSNQ5TDP6 509 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 GLB1LQ6UWU2 654 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 TRABD2AQ86V40 505 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 OR6P1Q8NGX9 317 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 SEC14L1Q92503 715 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 MCUR1Q96AQ8 359 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 DTLQ9NZJ0 730 aa14.17□□□□□ -0.14
CCDC88A-211ENST00000471947 MANSC4A6NHS7 340 aaPredicted RBP14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 CERCAMQ5T4B2 595 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 FAM171A1Q5VUB5 890 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 CLEC20AQ6ZU45 233 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 EFCAB3Q8N7B9 438 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 CCNYL1Q8N7R7 359 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 ST13P5Q8NFI4 369 aaPredicted RBP14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 CCDC124Q96CT7 223 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 STAMBPL1Q96FJ0 436 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 SERAC1Q96JX3 654 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 KLHL5Q96PQ7 755 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 APBA2Q99767 749 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 CRTAC1Q9NQ79 661 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 TRPV2Q9Y5S1 764 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 SNX3O60493 162 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 LTFP02788 710 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 COPS2P61201 443 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 NOMO2Q5JPE7 1267 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 LRRC38Q5VT99 294 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 RHBDF2Q6PJF5 856 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 SH3TC2Q8TF17 1288 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 KLC4Q9NSK0 619 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 MT-CYBP00156 380 aaPredicted RBP14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 ENO1P06733 434 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 MRPS5P82675 430 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 DLG2Q15700 870 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 RASAL3Q86YV0 1011 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 CMASQ8NFW8 434 aaPredicted RBP14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 GTF3C2Q8WUA4 911 aaPredicted RBP14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms