RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 CSRP1P21291 193 aaKnown RBP17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 IL12RB1P42701 662 aa17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 ZNF445P59923 1031 aa17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 SHC2P98077 582 aa17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 GCNT1Q02742 428 aa17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 FUT11Q495W5 492 aa17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 SH3PXD2AQ5TCZ1 1133 aa17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 PMF1Q6P1K2 205 aa17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 MSANTD2Q6P1R3 559 aa17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 KIAA1324Q6UXG2 1013 aaKnown RBP17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 METTL3Q86U44 580 aaKnown RBP17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 SLC41A1Q8IVJ1 513 aa17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 RBBP8NLQ8NC74 664 aaPredicted RBP17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 IRGQQ8WZA9 623 aa17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 ZSWIM1Q9BR11 485 aa17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 ELOVL2Q9NXB9 296 aa17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 STOML2Q9UJZ1 356 aa17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 SLC6A14Q9UN76 642 aa17.3■□□□□ 0.36
CCDC28B-204ENST00000469003 ZFYVE26Q68DK2 2539 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 ANKRD11Q6UB99 2663 aaPredicted RBP17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 M0QYV0 167 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 GIPC1O14908 333 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 TIMM44O43615 452 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 NDUFS2O75306 463 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 GNA14O95837 355 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 CFIP05156 583 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 BRD2P25440 801 aaKnown RBP17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 HOXD9P28356 352 aaPredicted RBP17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 RGS7P49802 495 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 MARSP56192 900 aaKnown RBP17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 PAK1Q13153 545 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 COL9A2Q14055 689 aaPredicted RBP17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 ZNF234Q14588 700 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 UAP1L1Q3KQV9 507 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 ARHGEF19Q8IW93 802 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 TRIM59Q8IWR1 403 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 EHBP1Q8NDI1 1231 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 ZNF419Q96HQ0 510 aaPredicted RBP17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 HSFY1Q96LI6 401 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 HSPA12BQ96MM6 686 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 CD93Q9NPY3 652 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 CKAP5Q14008 2032 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 GON4LQ3T8J9 2241 aa17.29■□□□□ 0.36
CCDC28B-204ENST00000469003 BIN1O00499 593 aa17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 MSI1O43347 362 aaKnown RBP17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 SYNCRIPO60506 623 aaKnown RBP17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 TSPAN3O60637 253 aa17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 GADD45BO75293 160 aaPredicted RBP17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 SERPINF2P08697 491 aa17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 CEACAM1P13688 526 aa17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 MAPK8P45983 427 aa17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 STX17P56962 302 aa17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 KCNH2Q12809 1159 aa17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 ADGRF1Q5T601 910 aa17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 TMEM215Q68D42 235 aa17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 RRAGAQ7L523 313 aa17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 TRIML1Q8N9V2 468 aa17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 TMA16Q96EY4 203 aaKnown RBP17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 CIPCQ9C0C6 399 aa17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 MKRN2Q9H000 416 aaKnown RBP17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 PRDM16Q9HAZ2 1276 aa17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 CAPN10Q9HC96 672 aa17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 USP36Q9P275 1121 aaKnown RBP17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 PCDH15Q96QU1 1955 aa17.28■□□□□ 0.36
CCDC28B-204ENST00000469003 FASNP49327 2511 aaKnown RBP17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 ADAMTS9Q9P2N4 1935 aa17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 PIK3R2O00459 728 aa17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 FBXO21O94952 628 aa17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 CALCAP01258 141 aa17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 IGLV3-27P01718 113 aa17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 AFPP02771 609 aaKnown RBP17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 LTFP02788 710 aa17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 NCAM1P13591 858 aa17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 PRKCHP24723 683 aa17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 CD6P30203 668 aa17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 GFPT1Q06210 699 aaPredicted RBP17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 ZNF252P-AS1Q0IIN9 211 aa17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 WFIKKN2Q8TEU8 576 aa17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 SORCS1Q8WY21 1168 aa17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 GOLGA1Q92805 767 aa17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 FOXJ1Q92949 421 aa17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 KREMEN1Q96MU8 473 aa17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 SRRTQ9BXP5 876 aaKnown RBP17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 IRX2Q9BZI1 471 aaPredicted RBP17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 ITM2CQ9NQX7 267 aa17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 CNTN6Q9UQ52 1028 aa17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.27■□□□□ 0.36
CCDC28B-204ENST00000469003 ASCC3Q8N3C0 2202 aaKnown RBP17.27■□□□□ 0.35
CCDC28B-204ENST00000469003 HLA-FP30511 346 aa17.26■□□□□ 0.35
CCDC28B-204ENST00000469003 ATXN3P54252 364 aaPredicted RBP17.26■□□□□ 0.35
CCDC28B-204ENST00000469003 ARID5AQ03989 594 aa17.26■□□□□ 0.35
CCDC28B-204ENST00000469003 RING1Q06587 406 aa17.26■□□□□ 0.35
CCDC28B-204ENST00000469003 SYCP2LQ5T4T6 812 aa17.26■□□□□ 0.35
CCDC28B-204ENST00000469003 NUGGCQ68CJ6 796 aa17.26■□□□□ 0.35
CCDC28B-204ENST00000469003 SERPINA13PQ6UXR4 307 aa17.26■□□□□ 0.35
CCDC28B-204ENST00000469003 TMPRSS6Q8IU80 811 aa17.26■□□□□ 0.35
CCDC28B-204ENST00000469003 UNC45BQ8IWX7 931 aa17.26■□□□□ 0.35
CCDC28B-204ENST00000469003 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.26■□□□□ 0.35
CCDC28B-204ENST00000469003 CLEC4CQ8WTT0 213 aa17.26■□□□□ 0.35
CCDC28B-204ENST00000469003 SIPA1Q96FS4 1042 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms