RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 ECHDC2Q86YB7 292 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 MYLK4Q86YV6 388 aaPredicted RBP11.98□□□□□ -0.49
NPHP4-204ENST00000460696 FZD8Q9H461 694 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 DGKIO75912 1065 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 AVPR1AP37288 418 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 FAM110CQ1W6H9 321 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 HSP90AA5PQ58FG0 334 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 IL31Q6EBC2 164 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 TEX9Q8N6V9 391 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 DNAJC9Q8WXX5 260 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 ZNF317Q96PQ6 595 aaPredicted RBP11.98□□□□□ -0.49
NPHP4-204ENST00000460696 PCYT2Q99447 389 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 LPIN3Q9BQK8 851 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 SYT15Q9BQS2 421 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 ULBP1Q9BZM6 244 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 FAM96AQ9H5X1 160 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 ABI2Q9NYB9 513 aaPredicted RBP11.98□□□□□ -0.49
NPHP4-204ENST00000460696 NUDT5Q9UKK9 219 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 LAMB1P07942 1786 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 KIAA1551Q9HCM1 1747 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 NVLO15381 856 aaKnown RBP11.97□□□□□ -0.49
NPHP4-204ENST00000460696 EDF1O60869 148 aaKnown RBP11.97□□□□□ -0.49
NPHP4-204ENST00000460696 GLRA3O75311 464 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 GMNNO75496 209 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 ITGBL1O95965 494 aaPredicted RBP11.97□□□□□ -0.49
NPHP4-204ENST00000460696 FOXN2P32314 431 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 WDR4P57081 412 aaKnown RBP11.97□□□□□ -0.49
NPHP4-204ENST00000460696 ITGA9Q13797 1035 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 NOMO1Q15155 1222 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 SLC45A4Q5BKX6 768 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 DPY19L2P1Q6NXN4 242 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 NT5DC4Q86YG4 428 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 PLD5Q8N7P1 536 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 SERPINI1Q99574 410 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 TBC1D10AQ9BXI6 508 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 PFDN4Q9NQP4 134 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 FBXO6Q9NRD1 293 aaPredicted RBP11.97□□□□□ -0.49
NPHP4-204ENST00000460696 ADA2Q9NZK5 511 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 NR2E3Q9Y5X4 410 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 SMCHD1A6NHR9 2005 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 UTRNP46939 3433 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 A8MUI8 341 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 CHADO15335 359 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 TMEM63AO94886 807 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 ERVK-10P10266 1014 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 MFSD10Q14728 455 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 CAPRIN2Q6IMN6 1127 aaKnown RBP11.97□□□□□ -0.49
NPHP4-204ENST00000460696 LCLAT1Q6UWP7 414 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 POU5F2Q8N7G0 328 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 TTC8Q8TAM2 541 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 SOCS4Q8WXH5 440 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 HAPLN2Q9GZV7 340 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 PRDM12Q9H4Q4 367 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 LRRC40Q9H9A6 602 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 IARS2Q9NSE4 1012 aaKnown RBP11.97□□□□□ -0.49
NPHP4-204ENST00000460696 GOLGA8QA0A0J9YX86 632 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 GOLGA8OA6NCC3 632 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 GOLGA8NF8WBI6 632 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 USP17L7P0C7H9 530 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 ENO3P13929 434 aaPredicted RBP11.97□□□□□ -0.49
NPHP4-204ENST00000460696 AKR1A1P14550 325 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 CPB1P15086 417 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 PSMB4P28070 264 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 ATXN1P54253 815 aaKnown RBP11.97□□□□□ -0.49
NPHP4-204ENST00000460696 ANKRD20A2Q5SQ80 823 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 ANKRD20A1Q5TYW2 823 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 PIGWQ7Z7B1 504 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 TMEM130Q8N3G9 435 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 FNIP1Q8TF40 1166 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 GABRQQ9UN88 632 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 ECM29Q5VYK3 1845 aa11.97□□□□□ -0.49
NPHP4-204ENST00000460696 MAST2Q6P0Q8 1798 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 TCRBV7S3A2A0A539 114 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 TPD52P55327 224 aaPredicted RBP11.96□□□□□ -0.49
NPHP4-204ENST00000460696 XRCC4Q13426 336 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 RNF43Q68DV7 783 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 RAB44Q7Z6P3 723 aaPredicted RBP11.96□□□□□ -0.49
NPHP4-204ENST00000460696 ANKRD52Q8NB46 1076 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 PIP4K2CQ8TBX8 421 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 SLCO2A1Q92959 643 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 IFT43Q96FT9 208 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 LRGUKQ96M69 825 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 NAT9Q9BTE0 207 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 ATXN3LQ9H3M9 355 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 EPS15L1Q9UBC2 864 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 C2orf71A6NGG8 1288 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 BNIP3LO60238 219 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 RALBP11234 206 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 MGAT5Q09328 741 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 BST1Q10588 318 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 DNAL1Q4LDG9 190 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 NAPEPLDQ6IQ20 393 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 ZDHHC17Q8IUH5 632 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 ATP6V1E2Q96A05 226 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 ELMO2Q96JJ3 720 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 EIF2AQ9BY44 585 aaKnown RBP11.96□□□□□ -0.49
NPHP4-204ENST00000460696 AAASQ9NRG9 546 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 PCDH10Q9P2E7 1040 aa11.96□□□□□ -0.49
NPHP4-204ENST00000460696 TSR3Q9UJK0 312 aaKnown RBP11.96□□□□□ -0.49
NPHP4-204ENST00000460696 SLX4Q8IY92 1834 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms