RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 PDE1CQ14123 709 aaPredicted RBP12.06□□□□□ -0.48
CPSF3-202ENST00000460593 C15orf59Q2T9L4 293 aaPredicted RBP12.06□□□□□ -0.48
CPSF3-202ENST00000460593 RARS2Q5T160 578 aaKnown RBP12.06□□□□□ -0.48
CPSF3-202ENST00000460593 FAM219BQ5XKK7 198 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 TMEM198Q66K66 360 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 CMTM5Q96DZ9 223 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 KLHL32Q96NJ5 620 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 COA1Q9GZY4 146 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 COG4Q9H9E3 785 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 TMEM216Q9P0N5 145 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 EBF1Q9UH73 591 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 RIMS3Q9UJD0 308 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 RNF11Q9Y3C5 154 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 EXTL3O43909 919 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 GTF2A2P52657 109 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 ADGRE1Q14246 886 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 HSP90AA5PQ58FG0 334 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 CMC1Q7Z7K0 106 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 ZBTB33Q86T24 672 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 MYO1HQ8N1T3 1032 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 TMEM35BQ8NCS4 154 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 GIPC3Q8TF64 312 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 TMEM174Q8WUU8 243 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 CPXM1Q96SM3 734 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 MTMR12Q9C0I1 747 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 POLR3FQ9H1D9 316 aaPredicted RBP12.06□□□□□ -0.48
CPSF3-202ENST00000460593 NRDE2Q9H7Z3 1164 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 EHMT1Q9H9B1 1298 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 CISHQ9NSE2 258 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 RSL24D1Q9UHA3 163 aaKnown RBP12.06□□□□□ -0.48
CPSF3-202ENST00000460593 ARHGAP26Q9UNA1 814 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 SSX2IPQ9Y2D8 614 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 COL5A3P25940 1745 aaPredicted RBP12.06□□□□□ -0.48
CPSF3-202ENST00000460593 ARHGAP10A1A4S6 786 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 C7orf72A4D263 438 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 TCP10L2B9ZVM9 353 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 ZNF195O14628 629 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 METTL18O95568 372 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 PTPN7P35236 360 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 NDST2P52849 883 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 MAPK10P53779 464 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 LGSNQ5TDP6 509 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 RNF168Q8IYW5 571 aaPredicted RBP12.06□□□□□ -0.48
CPSF3-202ENST00000460593 ZFRQ96KR1 1074 aaKnown RBP12.06□□□□□ -0.48
CPSF3-202ENST00000460593 Q9H521 79 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 TIMMDC1Q9NPL8 285 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 SEPT9Q9UHD8 586 aaPredicted RBP12.06□□□□□ -0.48
CPSF3-202ENST00000460593 MAGED2Q9UNF1 606 aaPredicted RBP12.06□□□□□ -0.48
CPSF3-202ENST00000460593 CROCCQ5TZA2 2017 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 MYO18AQ92614 2054 aaKnown RBP12.05□□□□□ -0.48
CPSF3-202ENST00000460593 TMEM221A6NGB7 291 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 PPEF1O14829 653 aaPredicted RBP12.05□□□□□ -0.48
CPSF3-202ENST00000460593 CSDE1O75534 798 aaKnown RBP12.05□□□□□ -0.48
CPSF3-202ENST00000460593 RNASEH2AO75792 299 aaKnown RBP12.05□□□□□ -0.48
CPSF3-202ENST00000460593 PRKCGP05129 697 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 RXRGP48443 463 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 CTBSQ01459 385 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 CEACAM7Q14002 265 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 MTERF2Q49AM1 385 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 SCYL2Q6P3W7 929 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 POTEHQ6S545 545 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 HHIPL2Q6UWX4 724 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 NAPRTQ6XQN6 538 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 SPNS2Q8IVW8 549 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 AHI1Q8N157 1196 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 TSPAN14Q8NG11 270 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 RCN3Q96D15 328 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 PIWIL1Q96J94 861 aaKnown RBP12.05□□□□□ -0.48
CPSF3-202ENST00000460593 WRNIP1Q96S55 665 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 IMPG2Q9BZV3 1241 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 ZNF696Q9H7X3 374 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 NXF1Q9UBU9 619 aaKnown RBP12.05□□□□□ -0.48
CPSF3-202ENST00000460593 HES2Q9Y543 173 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 WDR27A2RRH5 827 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 TRIM43BA6NCK2 446 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 HMGCRP04035 888 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 ARSAP15289 507 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 PRKCHP24723 683 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 ETFBP38117 255 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 CD300CQ08708 224 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 HADHQ16836 314 aaKnown RBP12.05□□□□□ -0.48
CPSF3-202ENST00000460593 SLC9A4Q6AI14 798 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 ELMSAN1Q6PJG2 1045 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 C4orf19Q8IY42 314 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 SMYD1Q8NB12 490 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 ATP6V1E2Q96A05 226 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 CEP41Q9BYV8 373 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 SUDS3Q9H7L9 328 aaPredicted RBP12.05□□□□□ -0.48
CPSF3-202ENST00000460593 RRN3Q9NYV6 651 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 TUBGCP4Q9UGJ1 667 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 FBXO40Q9UH90 709 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 USP18Q9UMW8 372 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 SIPA1L1O43166 1804 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 UTRNP46939 3433 aa12.05□□□□□ -0.48
CPSF3-202ENST00000460593 CLRN2A0PK11 232 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 LRRIQ4A6NIV6 560 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 PLIN3O60664 434 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 ERBB2P04626 1255 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 KRT7P08729 469 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 SLC5A3P53794 718 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms