RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 ZNF883P0CG24 379 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 AFF3P51826 1226 aaKnown RBP13.89□□□□□ -0.19
HMGB3-204ENST00000448905 MCCD1P59942 119 aaPredicted RBP13.89□□□□□ -0.19
HMGB3-204ENST00000448905 ZBTB16Q05516 673 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 SFSWAPQ12872 951 aaKnown RBP13.89□□□□□ -0.19
HMGB3-204ENST00000448905 COL9A2Q14055 689 aaPredicted RBP13.89□□□□□ -0.19
HMGB3-204ENST00000448905 TEAD4Q15561 434 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 TRIP4Q15650 581 aaPredicted RBP13.89□□□□□ -0.19
HMGB3-204ENST00000448905 FNDC3BQ53EP0 1204 aaKnown RBP13.89□□□□□ -0.19
HMGB3-204ENST00000448905 SGO2Q562F6 1265 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 ADGRF1Q5T601 910 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 TCERG1LQ5VWI1 586 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 KRBA2Q6ZNG9 492 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 GLRX5Q86SX6 157 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 SIX6OS1Q8N1H7 587 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 ZCCHC9Q8N567 271 aaKnown RBP13.89□□□□□ -0.19
HMGB3-204ENST00000448905 ENGASEQ8NFI3 743 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 OR2T3Q8NH03 318 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 WFIKKN2Q8TEU8 576 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 TSG101Q99816 390 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 ARID3AQ99856 593 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 FBRSQ9HAH7 460 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 TM7SF3Q9NS93 570 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 ABCC13Q9NSE7 274 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 RMND1Q9NWS8 449 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 SUN2Q9UH99 717 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 EIF2B4Q9UI10 523 aaKnown RBP13.89□□□□□ -0.19
HMGB3-204ENST00000448905 LHX6Q9UPM6 363 aa13.89□□□□□ -0.19
HMGB3-204ENST00000448905 CHD6Q8TD26 2715 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 FAM237AA0A1B0GTK4 181 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 A0A1W2PQ27 194 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 A0A1W2PQ64 194 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 KCNJ18B7U540 433 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 XPO1O14980 1071 aaKnown RBP13.88□□□□□ -0.19
HMGB3-204ENST00000448905 TSPAN3O60637 253 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 ZNF202O95125 648 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 LATS1O95835 1130 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 CD19P15391 556 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 BCAT1P54687 386 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 BST2Q10589 180 aaKnown RBP13.88□□□□□ -0.19
HMGB3-204ENST00000448905 PKP1Q13835 747 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 HLA-BQ31612 363 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 BSPRYQ5W0U4 402 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 FAM124AQ86V42 546 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 FMNL3Q8IVF7 1028 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 CCDC117Q8IWD4 279 aaPredicted RBP13.88□□□□□ -0.19
HMGB3-204ENST00000448905 UNC45BQ8IWX7 931 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 FAM217AQ8IXS0 508 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 PNPLA1Q8N8W4 532 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 RHBDD1Q8TEB9 315 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 GOLGA1Q92805 767 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 SEMA4DQ92854 862 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 GTPBP4Q9BZE4 634 aaKnown RBP13.88□□□□□ -0.19
HMGB3-204ENST00000448905 IRX2Q9BZI1 471 aaPredicted RBP13.88□□□□□ -0.19
HMGB3-204ENST00000448905 ULBP1Q9BZM6 244 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 CCDC86Q9H6F5 360 aaKnown RBP13.88□□□□□ -0.19
HMGB3-204ENST00000448905 CD93Q9NPY3 652 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 PCOLCE2Q9UKZ9 415 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 NCKAP1Q9Y2A7 1128 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 PCDHGB2Q9Y5G2 931 aa13.88□□□□□ -0.19
HMGB3-204ENST00000448905 DNTTP04053 509 aa13.87□□□□□ -0.19
HMGB3-204ENST00000448905 VDRP11473 427 aa13.87□□□□□ -0.19
HMGB3-204ENST00000448905 POLR2EP19388 210 aaKnown RBP13.87□□□□□ -0.19
HMGB3-204ENST00000448905 SLC11A2P49281 568 aa13.87□□□□□ -0.19
HMGB3-204ENST00000448905 COPAP53621 1224 aa13.87□□□□□ -0.19
HMGB3-204ENST00000448905 FKBP3Q00688 224 aaKnown RBP13.87□□□□□ -0.19
HMGB3-204ENST00000448905 RING1Q06587 406 aa13.87□□□□□ -0.19
HMGB3-204ENST00000448905 CAMK2GQ13555 558 aaPredicted RBP13.87□□□□□ -0.19
HMGB3-204ENST00000448905 GOLGA7BQ2TAP0 167 aa13.87□□□□□ -0.19
HMGB3-204ENST00000448905 MPP7Q5T2T1 576 aa13.87□□□□□ -0.19
HMGB3-204ENST00000448905 CCNI2Q6ZMN8 369 aaPredicted RBP13.87□□□□□ -0.19
HMGB3-204ENST00000448905 AHI1Q8N157 1196 aa13.87□□□□□ -0.19
HMGB3-204ENST00000448905 SORCS1Q8WY21 1168 aa13.87□□□□□ -0.19
HMGB3-204ENST00000448905 SNX19Q92543 992 aa13.87□□□□□ -0.19
HMGB3-204ENST00000448905 TATDN2Q93075 761 aa13.87□□□□□ -0.19
HMGB3-204ENST00000448905 SKA1Q96BD8 255 aa13.87□□□□□ -0.19
HMGB3-204ENST00000448905 EEF2KMTQ96G04 330 aa13.87□□□□□ -0.19
HMGB3-204ENST00000448905 DDX50Q9BQ39 737 aaKnown RBP13.87□□□□□ -0.19
HMGB3-204ENST00000448905 BTBD1Q9H0C5 482 aa13.87□□□□□ -0.19
HMGB3-204ENST00000448905 LHX5Q9H2C1 402 aa13.87□□□□□ -0.19
HMGB3-204ENST00000448905 STOML2Q9UJZ1 356 aa13.87□□□□□ -0.19
HMGB3-204ENST00000448905 TSPAN16Q9UKR8 245 aa13.87□□□□□ -0.19
HMGB3-204ENST00000448905 CACNA1GO43497 2377 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 FLRT2O43155 660 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 IRAK2O43187 625 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 DFNA5O60443 496 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 RNASEH1O60930 286 aaKnown RBP13.86□□□□□ -0.19
HMGB3-204ENST00000448905 DLDP09622 509 aaKnown RBP13.86□□□□□ -0.19
HMGB3-204ENST00000448905 PRR29P0C7W0 189 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 SETSIPP0DME0 302 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 TBXAS1P24557 533 aaPredicted RBP13.86□□□□□ -0.19
HMGB3-204ENST00000448905 PRKCHP24723 683 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 CSNK1EP49674 416 aaKnown RBP13.86□□□□□ -0.19
HMGB3-204ENST00000448905 ST8SIA6P61647 398 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 SCAPQ12770 1279 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 CUL2Q13617 745 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 ZCWPW2Q504Y3 356 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 DCAF17Q5H9S7 520 aaPredicted RBP13.86□□□□□ -0.19
HMGB3-204ENST00000448905 CHST9Q7L1S5 443 aa13.86□□□□□ -0.19
HMGB3-204ENST00000448905 PROSER1Q86XN7 944 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms