RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 SEC13P55735 322 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 SLC8A3P57103 927 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 NOMO3P69849 1222 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 CYP27A1Q02318 531 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 CLEC16AQ2KHT3 1053 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 C2orf27AQ580R0 203 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 C10orf76Q5T2E6 689 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 NAA35Q5VZE5 725 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 ARHGAP17Q68EM7 881 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 PSAPL1Q6NUJ1 521 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 VSTM1Q6UX27 236 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 C4orf50Q6ZRC1 276 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 CRYBG2Q8N1P7 616 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 TMEM35BQ8NCS4 154 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 C1orf131Q8NDD1 294 aaKnown RBP12.72□□□□□ -0.37
PTPRF-208ENST00000437607 OLIG1Q8TAK6 271 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 IPO4Q8TEX9 1081 aaKnown RBP12.72□□□□□ -0.37
PTPRF-208ENST00000437607 TFAP2BQ92481 460 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 EXOC4Q96A65 974 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 TRIM11Q96F44 468 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 NOX5Q96PH1 765 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 MED10Q9BTT4 135 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 TTLL2Q9BWV7 592 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 TSGA10Q9BZW7 698 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 NAGPAQ9UK23 515 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 PPP2R2CQ9Y2T4 447 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 ADGRG1Q9Y653 693 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 LAMA5O15230 3695 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 GOLGA6L9A6NEM1 432 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 PATE3B3GLJ2 98 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 LCA5LO95447 670 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 NFATC1O95644 943 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 OLFM2O95897 454 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 CYP17A1P05093 508 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 SETSIPP0DME0 302 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 PTPN1P18031 435 aaKnown RBP12.71□□□□□ -0.37
PTPRF-208ENST00000437607 GBP1P32455 592 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 MAGEA1P43355 309 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 SLC6A11P48066 632 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 SLC7A9P82251 487 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 BST2Q10589 180 aaKnown RBP12.71□□□□□ -0.37
PTPRF-208ENST00000437607 NR1H3Q13133 447 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 CNGA2Q16280 664 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 LCLAT1Q6UWP7 414 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 TMEM92Q6UXU6 159 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 DENND5BQ6ZUT9 1274 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 FAM35AQ86V20 835 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 ADGRG2Q8IZP9 1017 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 C12orf29Q8N999 325 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 MDGA1Q8NFP4 955 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 TSTD1Q8NFU3 115 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 SLC30A5Q8TAD4 765 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 SLC2A14Q8TDB8 520 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 CTNNBL1Q8WYA6 563 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-208ENST00000437607 PCED1BQ96HM7 432 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 ZNF518BQ9C0D4 1074 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 KRT82Q9NSB4 513 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 RALYQ9UKM9 306 aaKnown RBP12.71□□□□□ -0.37
PTPRF-208ENST00000437607 MMP17Q9ULZ9 603 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 WASF3Q9UPY6 502 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 ZFYVE26Q68DK2 2539 aa12.71□□□□□ -0.37
PTPRF-208ENST00000437607 ITPR1Q14643 2758 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 ZNF840PA6NDX5 716 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 CDX4O14627 284 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-208ENST00000437607 SCAMP3O14828 347 aaKnown RBP12.7□□□□□ -0.38
PTPRF-208ENST00000437607 RTN2O75298 545 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 OAS1P00973 400 aaKnown RBP12.7□□□□□ -0.38
PTPRF-208ENST00000437607 CYP1A1P04798 512 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-208ENST00000437607 H2AFZP0C0S5 128 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 FAM200BP0CF97 657 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 GZMAP12544 262 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 PFKLP17858 780 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 GRIK1P39086 918 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 CENPCQ03188 943 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 CRY1Q16526 586 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 PPP1R26Q5T8A7 1209 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-208ENST00000437607 ANO7Q6IWH7 933 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 DENND1BQ6P3S1 775 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 H2AFVQ71UI9 128 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 C12orf40Q86WS4 652 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 CCDC33Q8N5R6 958 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 MYCBPAPQ8TBZ2 947 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 KIAA1524Q8TCG1 905 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 ZNF653Q96CK0 615 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 CYFIP2Q96F07 1278 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 SMARCD1Q96GM5 515 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 CEP295NLQ96MC4 621 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 PCDHB18PQ96TA0 734 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 ZSWIM1Q9BR11 485 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 LHX5Q9H2C1 402 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 SYNCQ9H7C4 482 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 TRPM5Q9NZQ8 1165 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 NENFQ9UMX5 172 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 REXO2Q9Y3B8 237 aaKnown RBP12.7□□□□□ -0.38
PTPRF-208ENST00000437607 PCDHA13Q9Y5I0 950 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 CPQQ9Y646 472 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 FREM2Q5SZK8 3169 aa12.7□□□□□ -0.38
PTPRF-208ENST00000437607 PKD1L2Q7Z442 2459 aa12.69□□□□□ -0.38
PTPRF-208ENST00000437607 TP53BP1Q12888 1972 aaPredicted RBP12.69□□□□□ -0.38
PTPRF-208ENST00000437607 BAHCC1Q9P281 2608 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms