RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 C4orf50Q6ZRC1 276 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 ERLEC1Q96DZ1 483 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 NRKQ7Z2Y5 1582 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 EMSYQ7Z589 1322 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 SEC24DO94855 1032 aaPredicted RBP7.36□□□□□ -1.23
VPS53-204ENST00000437048 NPY2RP49146 381 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 CAPZA1P52907 286 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 RAB43Q86YS6 212 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 REEP1Q9H902 201 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 MAGEL2Q9UJ55 1249 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 SLC22A1O15245 554 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 KITP10721 976 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 THRBP10828 461 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 RENBPP51606 427 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 LRRC24Q50LG9 513 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 TBCELQ5QJ74 424 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 PDPK2PQ6A1A2 396 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 CYP2U1Q7Z449 544 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 RYBPQ8N488 228 aaPredicted RBP7.36□□□□□ -1.23
VPS53-204ENST00000437048 ZCCHC9Q8N567 271 aaKnown RBP7.36□□□□□ -1.23
VPS53-204ENST00000437048 POC5Q8NA72 575 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 ZHX1-C8orf76Q96EF9 292 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 CDCA5Q96FF9 252 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 AKT3Q9Y243 479 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 CASZ1Q86V15 1759 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 MYO3AQ8NEV4 1616 aa7.36□□□□□ -1.23
VPS53-204ENST00000437048 ESYT3A0FGR9 886 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 CLDN25C9JDP6 229 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 IDO1P14902 403 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 SLC26A2P50443 739 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 ZNF568Q3ZCX4 644 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 ELMO2Q96JJ3 720 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 NDNQ99608 321 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 BCL7BQ9BQE9 202 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 NUDT5Q9UKK9 219 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 PKP3Q9Y446 797 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 PCDHA10Q9Y5I2 948 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 MAGED1Q9Y5V3 778 aaPredicted RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 DIDO1Q9BTC0 2240 aaKnown RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 BTN3A3O00478 584 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 YWHABP31946 246 aaKnown RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 CIAPIN1Q6FI81 312 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 NLGN1Q8N2Q7 840 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 NARS2Q96I59 477 aaKnown RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 TEFMQ96QE5 360 aaKnown RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 TCEAL7Q9BRU2 100 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 NT5C1AQ9BXI3 368 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 TBC1D13Q9NVG8 400 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 MROH2AA6NES4 1674 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 NR2F6P10588 404 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 NR1D2Q14995 579 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 REXO1L1PQ8IX06 675 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 DQX1Q8TE96 717 aaKnown RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 ADGRE3Q9BY15 652 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 ZSWIM5Q9P217 1185 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 MYO1GB0I1T2 1018 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 NOS1APO75052 506 aaPredicted RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 UGT2B11O75310 529 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 PEX14O75381 377 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 TRMUO75648 421 aaKnown RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 MLYCDO95822 493 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 GPIP06744 558 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 ITIH1P19827 911 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 PSMA1P25786 263 aaKnown RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 CREMQ03060 361 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 KCNMA1Q12791 1236 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 SQLEQ14534 574 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 FASTKD5Q7L8L6 764 aaKnown RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 CHCHD4Q8N4Q1 142 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 PJA1Q8NG27 643 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 TMC2Q8TDI7 906 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 AFG1LQ8WV93 481 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 PRMT7Q9NVM4 692 aaPredicted RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 NXF1Q9UBU9 619 aaKnown RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 A0A0G2JPF8 293 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 LOC100653049A0A140TA62 436 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 HNRNPCL3B7ZW38 293 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 ITGAVP06756 1048 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 HNRNPCL4P0DMR1 293 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 SP4Q02446 784 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 VEPH1Q14D04 833 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 SYTL3Q4VX76 610 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 ATL1Q8WXF7 558 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 LY9Q9HBG7 655 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 MED11Q9P086 117 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 PRELID1Q9Y255 219 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 ATG7O95352 703 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 PLCZ1Q86YW0 608 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 GLYCTKQ8IVS8 523 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 SMYD4Q8IYR2 804 aaPredicted RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 COA1Q9GZY4 146 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 LATS2Q9NRM7 1088 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 ECE2O60344 883 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 CYBBP04839 570 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 RPA1P27694 616 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 STARP49675 285 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 MARSP56192 900 aaKnown RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 DLG1Q12959 904 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 ALLCQ8N6M5 410 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms