RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 SIP14410 1827 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 ELF3P78545 371 aaPredicted RBP12.32□□□□□ -0.44
PTPRN-204ENST00000423636 DRICH1Q6PGQ1 229 aaPredicted RBP12.32□□□□□ -0.44
PTPRN-204ENST00000423636 ALKAL1Q6UXT8 129 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 PARP9Q8IXQ6 854 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 NDUFAF2Q8N183 169 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 DNAAF3Q8N9W5 541 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 TRIB2Q92519 343 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 ZNF778Q96MU6 729 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 SMOQ99835 787 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 KLC2Q9H0B6 622 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 FAM105AQ9NUU6 356 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 ARL2BPQ9Y2Y0 163 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 TEX264Q9Y6I9 313 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 SLC15A5A6NIM6 579 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 NT5C1B-RDH14C9J2C7 533 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 SESN3P58005 492 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 ZBTB16Q05516 673 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 EFHC2Q5JST6 749 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 ANKRD20A2Q5SQ80 823 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 ANKRD20A1Q5TYW2 823 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 ANKRD20A3Q5VUR7 823 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 ALYREFQ86V81 257 aaKnown RBP12.32□□□□□ -0.44
PTPRN-204ENST00000423636 TNS4Q8IZW8 715 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 NPWQ8N729 165 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 DENND1AQ8TEH3 1009 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 RNF139Q8WU17 664 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 CYTH2Q99418 400 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 CNTN3Q9P232 1028 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 KLHL8Q9P2G9 620 aaPredicted RBP12.32□□□□□ -0.44
PTPRN-204ENST00000423636 LGALS13Q9UHV8 139 aa12.32□□□□□ -0.44
PTPRN-204ENST00000423636 DFFAO00273 331 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 FYNP06241 537 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 RCN2Q14257 317 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 NOMO2Q5JPE7 1267 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 OTUD1Q5VV17 481 aaPredicted RBP12.31□□□□□ -0.44
PTPRN-204ENST00000423636 AGMOQ6ZNB7 445 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 LRRTM3Q86VH5 581 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 CNPY4Q8N129 248 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 CCHCR1Q8TD31 782 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 TTC25Q96NG3 672 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 AGAP2Q99490 1192 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 C20orf27Q9GZN8 174 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 SMIM35A0A1B0GVV1 85 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 EEF2KO00418 725 aaKnown RBP12.31□□□□□ -0.44
PTPRN-204ENST00000423636 B4GALT3O60512 393 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 NPR3P17342 541 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 PRKCZQ05513 592 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 MTFR1Q15390 333 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 OTOP3Q7RTS5 596 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 ZNF354CQ86Y25 554 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 IFNLR1Q8IU57 520 aaPredicted RBP12.31□□□□□ -0.44
PTPRN-204ENST00000423636 EFCAB3Q8N7B9 438 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 GPATCH11Q8N954 259 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 ZMIZ2Q8NF64 920 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 SPATA22Q8NHS9 363 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 FAM136AQ96C01 138 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 SRPK1Q96SB4 655 aaKnown RBP12.31□□□□□ -0.44
PTPRN-204ENST00000423636 SYT15Q9BQS2 421 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 POPDC2Q9HBU9 364 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 LOC285556D6RIA3 1793 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 MYO15AQ9UKN7 3530 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 CCL22O00626 93 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 COPEO14579 308 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 THP07101 528 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 ERCC2P18074 760 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 EPHB2P29323 1055 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 AVPR1AP37288 418 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 RPL10AP62906 217 aaKnown RBP12.31□□□□□ -0.44
PTPRN-204ENST00000423636 MORN1Q5T089 497 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 CERCAMQ5T4B2 595 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 ZNF534Q76KX8 674 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 ACVR1CQ8NER5 493 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 HTR3CQ8WXA8 447 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 ADAM2Q99965 735 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 MANSC1Q9H8J5 431 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 VRTNQ9H8Y1 702 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 SYBUQ9NX95 663 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 MPP6Q9NZW5 540 aa12.31□□□□□ -0.44
PTPRN-204ENST00000423636 M0QZ92 97 aa12.3□□□□□ -0.44
PTPRN-204ENST00000423636 RASSF9O75901 435 aa12.3□□□□□ -0.44
PTPRN-204ENST00000423636 ASGR1P07306 291 aa12.3□□□□□ -0.44
PTPRN-204ENST00000423636 FAM200BP0CF97 657 aa12.3□□□□□ -0.44
PTPRN-204ENST00000423636 SERPINB3P29508 390 aa12.3□□□□□ -0.44
PTPRN-204ENST00000423636 STIP1P31948 543 aaKnown RBP12.3□□□□□ -0.44
PTPRN-204ENST00000423636 MRPS5P82675 430 aaKnown RBP12.3□□□□□ -0.44
PTPRN-204ENST00000423636 PEX6Q13608 980 aa12.3□□□□□ -0.44
PTPRN-204ENST00000423636 SHKBP1Q8TBC3 707 aa12.3□□□□□ -0.44
PTPRN-204ENST00000423636 TFB1MQ8WVM0 346 aaKnown RBP12.3□□□□□ -0.44
PTPRN-204ENST00000423636 EMID1Q96A84 441 aaPredicted RBP12.3□□□□□ -0.44
PTPRN-204ENST00000423636 STAMBPL1Q96FJ0 436 aa12.3□□□□□ -0.44
PTPRN-204ENST00000423636 LRRC37BQ96QE4 947 aa12.3□□□□□ -0.44
PTPRN-204ENST00000423636 TKTL2Q9H0I9 626 aa12.3□□□□□ -0.44
PTPRN-204ENST00000423636 NDFIP2Q9NV92 336 aa12.3□□□□□ -0.44
PTPRN-204ENST00000423636 PAK5Q9P286 719 aa12.3□□□□□ -0.44
PTPRN-204ENST00000423636 CPSF2Q9P2I0 782 aaKnown RBP12.3□□□□□ -0.44
PTPRN-204ENST00000423636 HEY2Q9UBP5 337 aa12.3□□□□□ -0.44
PTPRN-204ENST00000423636 PADI3Q9ULW8 664 aa12.3□□□□□ -0.44
PTPRN-204ENST00000423636 TBX18O95935 607 aa12.3□□□□□ -0.44
PTPRN-204ENST00000423636 MT-CYBP00156 380 aaPredicted RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms