RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 SPARCL1Q14515 664 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 WDR43Q15061 677 aaKnown RBP eCLIP3.05□□□□□ -1.92
VPS41-206ENST00000418457 PDCD2Q16342 344 aaPredicted RBP3.05□□□□□ -1.92
VPS41-206ENST00000418457 PFKFB4Q16877 469 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 P3H1Q32P28 736 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 KRTAP15-1Q3LI76 137 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 AASDHQ4L235 1098 aaPredicted RBP3.05□□□□□ -1.92
VPS41-206ENST00000418457 CCDC38Q502W7 563 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 TMEM196Q5HYL7 178 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 SUMO4Q6EEV6 95 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 GRHL2Q6ISB3 625 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 FBXO42Q6P3S6 717 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.05□□□□□ -1.92
VPS41-206ENST00000418457 PNPLA1Q8N8W4 532 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 ATG16L2Q8NAA4 619 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 FAM71BQ8TC56 605 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 STYXQ8WUJ0 223 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 NELL1Q92832 810 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 REPS1Q96D71 796 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 ZG16BQ96DA0 208 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 SNX18Q96RF0 628 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 MMS19Q96T76 1030 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 EIF3CQ99613 913 aaKnown RBP3.05□□□□□ -1.92
VPS41-206ENST00000418457 MACROD1Q9BQ69 325 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 POLR3GLQ9BT43 218 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 PRDM13Q9H4Q3 707 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 EPS8L2Q9H6S3 715 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 UPF2Q9HAU5 1272 aaKnown RBP3.05□□□□□ -1.92
VPS41-206ENST00000418457 USP29Q9HBJ7 922 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 LRFN1Q9P244 771 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 ARHGEF17Q96PE2 2063 aaPredicted RBP3.05□□□□□ -1.92
VPS41-206ENST00000418457 SPHKAPQ2M3C7 1700 aa3.05□□□□□ -1.92
VPS41-206ENST00000418457 KDM5AP29375 1690 aaKnown RBP3.04□□□□□ -1.92
VPS41-206ENST00000418457 ABCA8O94911 1581 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 ASXL1Q8IXJ9 1541 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 DUOX2Q9NRD8 1548 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 MAGI2Q86UL8 1455 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 ZNF521Q96K83 1311 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 H7C1Q1 480 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 SYT5O00445 386 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 PCDH17O14917 1159 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 CA12O43570 354 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 TCEA3O75764 348 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 C1QL1O75973 258 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 CSTBP04080 98 aaKnown RBP3.04□□□□□ -1.92
VPS41-206ENST00000418457 ANXA6P08133 673 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 ITGA5P08648 1049 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 ZNF37AP17032 561 aaPredicted RBP3.04□□□□□ -1.92
VPS41-206ENST00000418457 RENBPP51606 427 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 COPB1P53618 953 aaKnown RBP3.04□□□□□ -1.92
VPS41-206ENST00000418457 CCDC15Q0P6D6 951 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 GALNT1Q10472 559 aaPredicted RBP3.04□□□□□ -1.92
VPS41-206ENST00000418457 SEMA3BQ13214 749 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 DNASE1L3Q13609 305 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 KCNJ12Q14500 433 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 TRIM71Q2Q1W2 868 aaKnown RBP3.04□□□□□ -1.92
VPS41-206ENST00000418457 GRAMD1BQ3KR37 738 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 C4orf46Q504U0 113 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 FAM83BQ5T0W9 1011 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 TMEM63BQ5T3F8 832 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 CCDC174Q6PII3 467 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 SERPINA13PQ6UXR4 307 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 RD3Q7Z3Z2 195 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 BCDIN3DQ7Z5W3 292 aaKnown RBP3.04□□□□□ -1.92
VPS41-206ENST00000418457 ADGRG3Q86Y34 549 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 CLASRPQ8N2M8 674 aaKnown RBP3.04□□□□□ -1.92
VPS41-206ENST00000418457 C12orf76Q8N812 135 aaPredicted RBP3.04□□□□□ -1.92
VPS41-206ENST00000418457 FAM71DQ8N9W8 422 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 FAM98AQ8NCA5 519 aaKnown RBP3.04□□□□□ -1.92
VPS41-206ENST00000418457 LTV1Q96GA3 475 aaPredicted RBP3.04□□□□□ -1.92
VPS41-206ENST00000418457 HS6ST2Q96MM7 605 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 RMDN3Q96TC7 470 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 PSMD1Q99460 953 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 CINPQ9BW66 212 aaPredicted RBP3.04□□□□□ -1.92
VPS41-206ENST00000418457 R3HDMLQ9H3Y0 253 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 SLITRK6Q9H5Y7 841 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 DACT1Q9NYF0 836 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 C11orf21Q9P2W6 132 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 SERGEFQ9UGK8 458 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 CEP152O94986 1710 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 MYOM1P52179 1685 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 TTC37Q6PGP7 1564 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 DIP2BQ9P265 1576 aa3.04□□□□□ -1.92
VPS41-206ENST00000418457 A2MP01023 1474 aa3.03□□□□□ -1.92
VPS41-206ENST00000418457 PRG4Q92954 1404 aaPredicted RBP3.03□□□□□ -1.92
VPS41-206ENST00000418457 ZNF644Q9H582 1327 aaPredicted RBP3.03□□□□□ -1.92
VPS41-206ENST00000418457 CDC42BPBQ9Y5S2 1711 aa3.03□□□□□ -1.92
VPS41-206ENST00000418457 hCG_1642624A0A1W2PR95 340 aa3.03□□□□□ -1.92
VPS41-206ENST00000418457 PLEKHD1A6NEE1 506 aa3.03□□□□□ -1.92
VPS41-206ENST00000418457 LRRC3CA6NJW4 275 aa3.03□□□□□ -1.92
VPS41-206ENST00000418457 POC1B-GALNT4F8VUJ3 575 aa3.03□□□□□ -1.92
VPS41-206ENST00000418457 UBE2Q2LH0YL09 131 aa3.03□□□□□ -1.92
VPS41-206ENST00000418457 SMIM22K7EJ46 135 aa3.03□□□□□ -1.92
VPS41-206ENST00000418457 IFRD1O00458 451 aaPredicted RBP3.03□□□□□ -1.92
VPS41-206ENST00000418457 ACKR2O00590 384 aa3.03□□□□□ -1.92
VPS41-206ENST00000418457 FCHO1O14526 889 aa3.03□□□□□ -1.92
VPS41-206ENST00000418457 DHHO43323 396 aa3.03□□□□□ -1.92
VPS41-206ENST00000418457 DNPH1O43598 174 aa3.03□□□□□ -1.92
VPS41-206ENST00000418457 TAF5LO75529 589 aa3.03□□□□□ -1.92
VPS41-206ENST00000418457 GCATO75600 419 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms