RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 THAP10Q9P2Z0 257 aaPredicted RBP13.54□□□□□ -0.24
LINC00339-202ENST00000416769 EIF2B4Q9UI10 523 aaKnown RBP13.54□□□□□ -0.24
LINC00339-202ENST00000416769 DNMT3LQ9UJW3 386 aa13.54□□□□□ -0.24
LINC00339-202ENST00000416769 LSM7Q9UK45 103 aaKnown RBP13.54□□□□□ -0.24
LINC00339-202ENST00000416769 A0A1B0GVT2 93 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 FAM149AA5PLN7 773 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 H0Y626 953 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 CILPO75339 1184 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 TRIM16O95361 564 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 GCLMP48507 274 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 SNRPFP62306 86 aaKnown RBP13.53□□□□□ -0.24
LINC00339-202ENST00000416769 INCA1Q0VD86 236 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 ENPP2Q13822 863 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 ZNF234Q14588 700 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 STX1AQ16623 288 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 SGSM1Q2NKQ1 1148 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 KCNT1Q5JUK3 1230 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 PPP1R26Q5T8A7 1209 aaPredicted RBP13.53□□□□□ -0.24
LINC00339-202ENST00000416769 PDZD3Q86UT5 571 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 TMPRSS6Q8IU80 811 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 DENND1CQ8IV53 801 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 SMYD4Q8IYR2 804 aaPredicted RBP13.53□□□□□ -0.24
LINC00339-202ENST00000416769 C1orf216Q8TAB5 229 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 SETD7Q8WTS6 366 aaKnown RBP13.53□□□□□ -0.24
LINC00339-202ENST00000416769 HNRNPLLQ8WVV9 542 aaKnown RBP13.53□□□□□ -0.24
LINC00339-202ENST00000416769 DNASE2BQ8WZ79 361 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 PIWIL1Q96J94 861 aaKnown RBP13.53□□□□□ -0.24
LINC00339-202ENST00000416769 ARID3AQ99856 593 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 GAREM1Q9H706 876 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 ITM2CQ9NQX7 267 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 DACH1Q9UI36 760 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 AGO1Q9UL18 857 aaKnown RBP13.53□□□□□ -0.24
LINC00339-202ENST00000416769 PCDHB9Q9Y5E1 797 aa13.53□□□□□ -0.24
LINC00339-202ENST00000416769 A0A1B0GTW7 788 aa13.52□□□□□ -0.25
LINC00339-202ENST00000416769 TULP2O00295 520 aa13.52□□□□□ -0.25
LINC00339-202ENST00000416769 CD44P16070 742 aaKnown RBP13.52□□□□□ -0.25
LINC00339-202ENST00000416769 PLA2G4AP47712 749 aa13.52□□□□□ -0.25
LINC00339-202ENST00000416769 CSNK1EP49674 416 aaKnown RBP13.52□□□□□ -0.25
LINC00339-202ENST00000416769 CLDN6P56747 220 aa13.52□□□□□ -0.25
LINC00339-202ENST00000416769 TYRO3Q06418 890 aa13.52□□□□□ -0.25
LINC00339-202ENST00000416769 HLA-BQ31612 363 aa13.52□□□□□ -0.25
LINC00339-202ENST00000416769 PREPLQ4J6C6 727 aaPredicted RBP13.52□□□□□ -0.25
LINC00339-202ENST00000416769 WDR45BQ5MNZ6 344 aa13.52□□□□□ -0.25
LINC00339-202ENST00000416769 NUDT18Q6ZVK8 323 aa13.52□□□□□ -0.25
LINC00339-202ENST00000416769 RABEPKQ7Z6M1 372 aa13.52□□□□□ -0.25
LINC00339-202ENST00000416769 UNC93AQ86WB7 457 aa13.52□□□□□ -0.25
LINC00339-202ENST00000416769 ZC3H3Q8IXZ2 948 aaKnown RBP13.52□□□□□ -0.25
LINC00339-202ENST00000416769 BAHD1Q8TBE0 780 aaPredicted RBP13.52□□□□□ -0.25
LINC00339-202ENST00000416769 CYB5D2Q8WUJ1 264 aa13.52□□□□□ -0.25
LINC00339-202ENST00000416769 SEMA4DQ92854 862 aa13.52□□□□□ -0.25
LINC00339-202ENST00000416769 MTG2Q9H4K7 406 aa13.52□□□□□ -0.25
LINC00339-202ENST00000416769 FAM124BQ9H5Z6 455 aaPredicted RBP13.52□□□□□ -0.25
LINC00339-202ENST00000416769 C6orf106Q9H6K1 298 aaPredicted RBP13.52□□□□□ -0.25
LINC00339-202ENST00000416769 CGNQ9P2M7 1197 aaKnown RBP13.52□□□□□ -0.25
LINC00339-202ENST00000416769 MAPK8IP1Q9UQF2 711 aa13.52□□□□□ -0.25
LINC00339-202ENST00000416769 SLC27A6Q9Y2P4 619 aa13.52□□□□□ -0.25
LINC00339-202ENST00000416769 TP53BP1Q12888 1972 aaPredicted RBP13.52□□□□□ -0.25
LINC00339-202ENST00000416769 KNTC1P50748 2209 aa13.52□□□□□ -0.25
LINC00339-202ENST00000416769 METTL12A8MUP2 240 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 GFRA2O00451 464 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 PDXKO00764 312 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 PSMA7O14818 248 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 ZBTB24O43167 697 aaPredicted RBP13.51□□□□□ -0.25
LINC00339-202ENST00000416769 TSPAN3O60637 253 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 ZIC2O95409 532 aaPredicted RBP13.51□□□□□ -0.25
LINC00339-202ENST00000416769 GNSP15586 552 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 ACSL1P33121 698 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 SGSHP51688 502 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 AP3M2P53677 418 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 ZNF445P59923 1031 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 GOLGA8FQ08AF8 430 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 GOLGA8DPQ0D2H9 430 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 SLC14A1Q13336 389 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 STARD3Q14849 445 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 DPCR1Q3MIW9 517 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 SYCP2LQ5T4T6 812 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 KLHDC10Q6PID8 442 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 FOXR2Q6PJQ5 311 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 BHLHA9Q7RTU4 235 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 CCDC186Q7Z3E2 898 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 SLC9A9Q8IVB4 645 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 TMC2Q8TDI7 906 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 SNX19Q92543 992 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 FOXJ1Q92949 421 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 SIPA1Q96FS4 1042 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 EEF2KMTQ96G04 330 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 NT5C1AQ9BXI3 368 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 CIPCQ9C0C6 399 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 CCDC86Q9H6F5 360 aaKnown RBP13.51□□□□□ -0.25
LINC00339-202ENST00000416769 TM7SF3Q9NS93 570 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 SUSD2Q9UGT4 822 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.51□□□□□ -0.25
LINC00339-202ENST00000416769 TRAF3IP3Q9Y228 551 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 USP3Q9Y6I4 520 aa13.51□□□□□ -0.25
LINC00339-202ENST00000416769 SLC12A8A0AV02 714 aa13.5□□□□□ -0.25
LINC00339-202ENST00000416769 BCAT2O15382 392 aaPredicted RBP13.5□□□□□ -0.25
LINC00339-202ENST00000416769 CALUO43852 315 aaPredicted RBP13.5□□□□□ -0.25
LINC00339-202ENST00000416769 EPHX1P07099 455 aa13.5□□□□□ -0.25
LINC00339-202ENST00000416769 ERCC5P28715 1186 aaPredicted RBP13.5□□□□□ -0.25
LINC00339-202ENST00000416769 VAMP7P51809 220 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms