RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 NUGGCQ68CJ6 796 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 OLFML1Q6UWY5 402 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 CYP4V2Q6ZWL3 525 aaPredicted RBP15.35■□□□□ 0.05
USP4-203ENST00000415188 CATSPER4Q7RTX7 472 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 ZNF598Q86UK7 904 aaKnown RBP15.35■□□□□ 0.05
USP4-203ENST00000415188 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.35■□□□□ 0.05
USP4-203ENST00000415188 MICAL1Q8TDZ2 1067 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 RTP4Q96DX8 246 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 PEBP4Q96S96 227 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 DHRS4Q9BTZ2 278 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 ACSS3Q9H6R3 686 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.35■□□□□ 0.05
USP4-203ENST00000415188 FGFR1OP2Q9NVK5 253 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 HAUS2Q9NVX0 235 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 CNTN3Q9P232 1028 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 PAK5Q9P286 719 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 SCN1AP35498 2009 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 CLUHO75153 1309 aa15.35■□□□□ 0.05
USP4-203ENST00000415188 A0A0U1RQF3 1178 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 POC1B-GALNT4F8VUJ3 575 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 PER2O15055 1255 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 HOXA2O43364 376 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 MBTPS2O43462 519 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 ASMTLO95671 621 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 CD48P09326 243 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 LAG3P18627 525 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 KRT15P19012 456 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 SDC4P31431 198 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 PTPN9P43378 593 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 GDF10P55107 478 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 ZP2Q05996 745 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 FASTKD3Q14CZ7 662 aaKnown RBP15.34■□□□□ 0.05
USP4-203ENST00000415188 DARS2Q6PI48 645 aaKnown RBP15.34■□□□□ 0.05
USP4-203ENST00000415188 UNC45BQ8IWX7 931 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 ABI1Q8IZP0 508 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 EFHBQ8N7U6 833 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 DENND1AQ8TEH3 1009 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 PPP2R3CQ969Q6 453 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 ALKBH8Q96BT7 664 aaKnown RBP15.34■□□□□ 0.05
USP4-203ENST00000415188 ZNF560Q96MR9 790 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 ZNF670Q9BS34 389 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 PRDM16Q9HAZ2 1276 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 SLC40A1Q9NP59 571 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 C11orf16Q9NQ32 467 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 TLR9Q9NR96 1032 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 RABGEF1Q9UJ41 708 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 CD207Q9UJ71 328 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 UBQLN1Q9UMX0 589 aaKnown RBP15.34■□□□□ 0.05
USP4-203ENST00000415188 FAM50BQ9Y247 325 aa15.34■□□□□ 0.05
USP4-203ENST00000415188 BCLAF3A2AJT9 711 aaKnown RBP15.33■□□□□ 0.05
USP4-203ENST00000415188 APOL1O14791 398 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 ZWINTO95229 277 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 GLP2RO95838 553 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 ZFXP17010 805 aaPredicted RBP15.33■□□□□ 0.05
USP4-203ENST00000415188 TAC1P20366 129 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 HOXA11P31270 313 aaPredicted RBP15.33■□□□□ 0.05
USP4-203ENST00000415188 HNRNPH1P31943 449 aaKnown RBP15.33■□□□□ 0.05
USP4-203ENST00000415188 GBP2P32456 591 aaPredicted RBP15.33■□□□□ 0.05
USP4-203ENST00000415188 PNPLA4P41247 253 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 GPX6P59796 221 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 UBE3AQ05086 875 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 CCDC15Q0P6D6 951 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 SMAD2Q15796 467 aaKnown RBP15.33■□□□□ 0.05
USP4-203ENST00000415188 CCDC14Q49A88 953 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 ANKRD22Q5VYY1 191 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 FBXW10Q5XX13 1052 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 RNF43Q68DV7 783 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 SLC9A4Q6AI14 798 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 TRNP1Q6NT89 227 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 ADGRD1Q6QNK2 874 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 LRRC43Q8N309 656 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 GDAP1Q8TB36 358 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 SLC35F5Q8WV83 523 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 FAF2Q96CS3 445 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 MSLNLQ96KJ4 702 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 LRFN3Q9BTN0 628 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 TLE6Q9H808 572 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 TMEM51Q9NW97 253 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 CLEC1BQ9P126 229 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 PRKAG3Q9UGI9 489 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 XPO7Q9UIA9 1087 aaKnown RBP15.33■□□□□ 0.05
USP4-203ENST00000415188 C5orf42Q9H799 3197 aa15.33■□□□□ 0.05
USP4-203ENST00000415188 TMEM63AO94886 807 aa15.33■□□□□ 0.04
USP4-203ENST00000415188 GSTA2P09210 222 aa15.33■□□□□ 0.04
USP4-203ENST00000415188 MAGEA6P43360 314 aa15.33■□□□□ 0.04
USP4-203ENST00000415188 ACADSBP45954 432 aa15.33■□□□□ 0.04
USP4-203ENST00000415188 RPL34P49207 117 aaKnown RBP15.33■□□□□ 0.04
USP4-203ENST00000415188 SMAD4Q13485 552 aaKnown RBP15.33■□□□□ 0.04
USP4-203ENST00000415188 KCNJ11Q14654 390 aa15.33■□□□□ 0.04
USP4-203ENST00000415188 TMEM31Q5JXX7 168 aa15.33■□□□□ 0.04
USP4-203ENST00000415188 PPP1R26Q5T8A7 1209 aaPredicted RBP15.33■□□□□ 0.04
USP4-203ENST00000415188 PLPP4Q5VZY2 271 aa15.33■□□□□ 0.04
USP4-203ENST00000415188 KCNT2Q6UVM3 1135 aa15.33■□□□□ 0.04
USP4-203ENST00000415188 ALKAL1Q6UXT8 129 aa15.33■□□□□ 0.04
USP4-203ENST00000415188 DPH6Q7L8W6 267 aa15.33■□□□□ 0.04
USP4-203ENST00000415188 CDKL3Q8IVW4 592 aaPredicted RBP15.33■□□□□ 0.04
USP4-203ENST00000415188 ADHFE1Q8IWW8 467 aa15.33■□□□□ 0.04
USP4-203ENST00000415188 PALM2Q8IXS6 379 aa15.33■□□□□ 0.04
USP4-203ENST00000415188 FAM71DQ8N9W8 422 aa15.33■□□□□ 0.04
USP4-203ENST00000415188 LPPQ93052 612 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms