RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 AKT1P31749 480 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 RCN2Q14257 317 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 TAF5Q15542 800 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 UGP2Q16851 508 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 FASTKD1Q53R41 847 aaKnown RBP9.37□□□□□ -0.91
LIG4-202ENST00000405925 ZNF697Q5TEC3 545 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 RETSATQ6NUM9 610 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 C16orf59Q7L2K0 433 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 LZTR1Q8N653 840 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 NETO2Q8NC67 525 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 FBXO36Q8NEA4 188 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 MAML1Q92585 1016 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 RNF157Q96PX1 679 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 PITPNM3Q9BZ71 974 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 ALG13Q9NP73 1137 aaKnown RBP9.37□□□□□ -0.91
LIG4-202ENST00000405925 WHRNQ9P202 907 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 CNTN3Q9P232 1028 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 PSMC3IPQ9P2W1 217 aaPredicted RBP9.37□□□□□ -0.91
LIG4-202ENST00000405925 COG5Q9UP83 839 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 SYN3O14994 580 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 ERCC2P18074 760 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 PCK1P35558 622 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 KRT33BQ14525 404 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 USP10Q14694 798 aaKnown RBP9.37□□□□□ -0.91
LIG4-202ENST00000405925 MORF4L2Q15014 288 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 KCTD19Q17RG1 926 aaPredicted RBP9.37□□□□□ -0.91
LIG4-202ENST00000405925 PDCD7Q8N8D1 485 aaKnown RBP9.37□□□□□ -0.91
LIG4-202ENST00000405925 ANKZF1Q9H8Y5 726 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 E2F8A0AVK6 867 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 ASMTLO95671 621 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 KCNE1P15382 129 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 RPL21P46778 160 aaKnown RBP9.36□□□□□ -0.91
LIG4-202ENST00000405925 NR2C2P49116 596 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 RENBPP51606 427 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 IFT88Q13099 833 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 ATG16L1Q676U5 607 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 TRIM67Q6ZTA4 783 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 POLNQ7Z5Q5 900 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 PRELID2Q8N945 189 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 UCMAQ8WVF2 138 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 ZMAT2Q96NC0 199 aaKnown RBP9.36□□□□□ -0.91
LIG4-202ENST00000405925 FICDQ9BVA6 458 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 ADAMTS10Q9H324 1103 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 CDC42EP4Q9H3Q1 356 aaKnown RBP9.36□□□□□ -0.91
LIG4-202ENST00000405925 VIPAS39Q9H9C1 493 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 GMIPQ9P107 970 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 AFF4Q9UHB7 1163 aaKnown RBP9.36□□□□□ -0.91
LIG4-202ENST00000405925 LAMB2P55268 1798 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 DNAJC6O75061 913 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 LRCH4O75427 683 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 CIB2O75838 187 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 WARSP23381 471 aaKnown RBP9.36□□□□□ -0.91
LIG4-202ENST00000405925 NDUFV1P49821 464 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 CREMQ03060 361 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 SLC12A1Q13621 1099 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 SLC25A52Q3SY17 297 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 ANKRD20A8PQ5CZ79 823 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 BEND6Q5SZJ8 279 aaPredicted RBP9.36□□□□□ -0.91
LIG4-202ENST00000405925 FBXO46Q6PJ61 603 aaPredicted RBP9.36□□□□□ -0.91
LIG4-202ENST00000405925 SLC26A9Q7LBE3 791 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 LRRC6Q86X45 466 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 DENND1CQ8IV53 801 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 LRRN4Q8WUT4 740 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 DCUN1D1Q96GG9 259 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 ELAC2Q9BQ52 826 aaKnown RBP9.36□□□□□ -0.91
LIG4-202ENST00000405925 UBXN6Q9BZV1 441 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 PRDM12Q9H4Q4 367 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 NRDE2Q9H7Z3 1164 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 PDLIM7Q9NR12 457 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 SENP1Q9P0U3 644 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 A0A1W2PQH9 124 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 PRR23AA6NEV1 266 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 TRDMT1O14717 391 aaKnown RBP9.36□□□□□ -0.91
LIG4-202ENST00000405925 PAPSS1O43252 624 aaPredicted RBP9.36□□□□□ -0.91
LIG4-202ENST00000405925 HCRTO43612 131 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 SNX2O60749 519 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 USP12O75317 370 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 SOAT2O75908 522 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 CYP1A1P04798 512 aaPredicted RBP9.36□□□□□ -0.91
LIG4-202ENST00000405925 TYMPP19971 482 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 ANKRD7Q92527 254 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 HHIPL1Q96JK4 782 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 PCMTD2Q9NV79 361 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 GJD2Q9UKL4 321 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 SDR42E2A6NKP2 422 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 AGTP01019 485 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 SERPINF2P08697 491 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 PECAM1P16284 738 aaPredicted RBP9.36□□□□□ -0.91
LIG4-202ENST00000405925 SMARCB1Q12824 385 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 ZRANB3Q5FWF4 1079 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 MROH9Q5TGP6 573 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 BBS12Q6ZW61 710 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 NUDCD3Q8IVD9 361 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 MFN1Q8IWA4 741 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 C10orf67Q8IYJ2 551 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 HNRNPLLQ8WVV9 542 aaKnown RBP9.36□□□□□ -0.91
LIG4-202ENST00000405925 STMN2Q93045 179 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 FCRL2Q96LA5 508 aaPredicted RBP9.36□□□□□ -0.91
LIG4-202ENST00000405925 EGFL8Q99944 293 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 FAM129AQ9BZQ8 928 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms