RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 NME5P56597 212 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 PURAQ00577 322 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 LGALS3BPQ08380 585 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 SLC35C1Q96A29 364 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 APOL2Q9BQE5 337 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 CLPBQ9H078 707 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 CYLDQ9NQC7 956 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 TBC1D13Q9NVG8 400 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 ABI2Q9NYB9 513 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 GGA2Q9UJY4 613 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 FBXO9Q9UK97 447 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 F5H5T6 163 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 AXIN1O15169 862 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 OLR1P78380 273 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 EFR3AQ14156 821 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 ATG16L2Q8NAA4 619 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 LINC00116Q8NCU8 138 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 PRRG3Q9BZD7 231 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 TMEM39BQ9GZU3 492 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 MYLK2Q9H1R3 596 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 DDX18Q9NVP1 670 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 PCDHGC5Q9Y5F6 944 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 TSPOAP1O95153 1857 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 CNTNAP4Q9C0A0 1308 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 LRRC10BA6NIK2 292 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 ITGALP20701 1170 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 CDK7P50613 346 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 CCT8P50990 548 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 TRAF2Q12933 501 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 NAB1Q13506 487 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 ZNF268Q14587 947 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 CYP4Z1Q86W10 505 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 EHD4Q9H223 541 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 CLOCKO15516 846 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 GLP2RO95838 553 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 STAG3L1P0CL83 205 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 CDH18Q13634 790 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 TMEM119Q4V9L6 283 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 TSHZ1Q6ZSZ6 1077 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 DHFR2Q86XF0 187 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 SVOPQ8N4V2 548 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 MSL3Q8N5Y2 521 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 TSEN2Q8NCE0 465 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 GMCL1P1Q8NEA9 526 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 KRCC1Q9NPI7 259 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 GGA3Q9NZ52 723 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 PNMA8BQ9ULN7 279 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 PTPRMP28827 1452 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 KBTBD13C9JR72 458 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 LDLRP01130 860 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 FGFR2P21802 821 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 SKIV2L2P42285 1042 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 ALDH1A3P47895 512 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 CSE1LP55060 971 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 AP1S2P56377 157 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 BST2Q10589 180 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 XRCC4Q13426 336 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 C1DQ13901 141 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 TAF1CQ15572 869 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 MAPK11Q15759 364 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 ATP13A5Q4VNC0 1218 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 GLRA4Q5JXX5 417 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 ZNF606Q8WXB4 792 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 TMEM237Q96Q45 408 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 ZNF184Q99676 751 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 CHMP1AQ9HD42 196 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 CCDC59Q9P031 241 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 MYRFQ9Y2G1 1151 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 USP32Q8NFA0 1604 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 C1orf167Q5SNV9 1468 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 PLA2G6O60733 806 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 ZNF682O95780 498 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 SLC26A2P50443 739 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 CDH17Q12864 832 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 POLD3Q15054 466 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 AMHR2Q16671 573 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 ZCCHC9Q8N567 271 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 GPRC5AQ8NFJ5 357 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 ENKURQ8TC29 256 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 PNMA5Q96PV4 448 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 APOL4Q9BPW4 351 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 SMNDC1O75940 238 aaKnown RBP eCLIP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 RAG1P15918 1043 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 PGAM1P18669 254 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 ITGAXP20702 1163 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 SSTR1P30872 391 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 ELF3P78545 371 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 VAC14Q08AM6 782 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 NR6A1Q15406 480 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 SLC45A4Q5BKX6 768 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 SPANXN3Q5MJ09 141 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 ANGEL2Q5VTE6 544 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 ADGRF2Q8IZF7 708 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 OR6Y1Q8NGX8 325 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 PRKD2Q9BZL6 878 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 NMRK2Q9NPI5 230 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 PDGFCQ9NRA1 345 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 NCF1BA6NI72 391 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 NCF1CA8MVU1 366 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 NCF1P14598 390 aaPredicted RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms