RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 KIF2BQ8N4N8 673 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 CCDC110Q8TBZ0 833 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 FAM149B1Q96BN6 582 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 LRRC39Q96DD0 335 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 ZMAT2Q96NC0 199 aaKnown RBP9.97□□□□□ -0.81
COL6A3-204ENST00000392003 TRIM55Q9BYV6 548 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 MANSC1Q9H8J5 431 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.97□□□□□ -0.81
COL6A3-204ENST00000392003 KLK14Q9P0G3 267 aa9.97□□□□□ -0.81
COL6A3-204ENST00000392003 SMIM35A0A1B0GVV1 85 aa9.96□□□□□ -0.81
COL6A3-204ENST00000392003 KPNA7A9QM74 516 aa9.96□□□□□ -0.81
COL6A3-204ENST00000392003 ZNF487B1APH4 448 aa9.96□□□□□ -0.81
COL6A3-204ENST00000392003 SNRPAP09012 282 aaKnown RBP9.96□□□□□ -0.81
COL6A3-204ENST00000392003 DARSP14868 501 aaKnown RBP9.96□□□□□ -0.81
COL6A3-204ENST00000392003 CA9Q16790 459 aa9.96□□□□□ -0.81
COL6A3-204ENST00000392003 SV2CQ496J9 727 aa9.96□□□□□ -0.81
COL6A3-204ENST00000392003 PKDCCQ504Y2 493 aa9.96□□□□□ -0.81
COL6A3-204ENST00000392003 SLC15A3Q8IY34 581 aa9.96□□□□□ -0.81
COL6A3-204ENST00000392003 PQLC3Q8N755 202 aa9.96□□□□□ -0.81
COL6A3-204ENST00000392003 BANPQ8N9N5 519 aa9.96□□□□□ -0.81
COL6A3-204ENST00000392003 TTC17Q96AE7 1141 aa9.96□□□□□ -0.81
COL6A3-204ENST00000392003 APOPT1Q96IL0 206 aa9.96□□□□□ -0.81
COL6A3-204ENST00000392003 KATNAL1Q9BW62 490 aa9.96□□□□□ -0.81
COL6A3-204ENST00000392003 MYLK2Q9H1R3 596 aa9.96□□□□□ -0.81
COL6A3-204ENST00000392003 ADAMTS10Q9H324 1103 aa9.96□□□□□ -0.81
COL6A3-204ENST00000392003 RETREG1Q9H6L5 497 aa9.96□□□□□ -0.81
COL6A3-204ENST00000392003 NPHS2Q9NP85 383 aa9.96□□□□□ -0.81
COL6A3-204ENST00000392003 CYLDQ9NQC7 956 aa9.96□□□□□ -0.81
COL6A3-204ENST00000392003 C17orf102A2RUQ5 167 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 TRDMT1O14717 391 aaKnown RBP9.96□□□□□ -0.82
COL6A3-204ENST00000392003 AVILO75366 819 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 UNC5CO95185 931 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 ITGBL1O95965 494 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-204ENST00000392003 GSTA2P09210 222 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 CCDC130P13994 396 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 AKAP5P24588 427 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 HOXA11P31270 313 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-204ENST00000392003 TUBP50607 506 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 HDAC4P56524 1084 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 YWHAZP63104 245 aaKnown RBP9.96□□□□□ -0.82
COL6A3-204ENST00000392003 ZBTB16Q05516 673 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 FSCN1Q16658 493 aaKnown RBP9.96□□□□□ -0.82
COL6A3-204ENST00000392003 SOWAHAQ2M3V2 549 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 SLC45A4Q5BKX6 768 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 MFSD14CQ5VZR4 134 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 MAMSTRQ6ZN01 415 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 OTOAQ7RTW8 1153 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 RASAL3Q86YV0 1011 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 IGDCC3Q8IVU1 814 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 ZNF398Q8TD17 642 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 HSFY1Q96LI6 401 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 CEP295NLQ96MC4 621 aa9.96□□□□□ -0.82
COL6A3-204ENST00000392003 NXF3Q9H4D5 531 aaKnown RBP9.96□□□□□ -0.82
COL6A3-204ENST00000392003 TRIM49D1C9J1S8 452 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 FAM200BP0CF97 657 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 SCNN1AP37088 669 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 SESN3P58005 492 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 DMPKQ09013 629 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 SREBF2Q12772 1141 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 MCUQ8NE86 351 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 SOCS4Q8WXH5 440 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 RTP4Q96DX8 246 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 WDR83Q9BRX9 315 aaKnown RBP9.95□□□□□ -0.82
COL6A3-204ENST00000392003 TSSK1BQ9BXA7 367 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 KATNBL1Q9H079 304 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 DPEP3Q9H4B8 488 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 PNPLA8Q9NP80 782 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 CNTN3Q9P232 1028 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 ZFP69BQ9UJL9 534 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 NOD1Q9Y239 953 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 ZSWIM8A7E2V4 1837 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 CSPG5O95196 566 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 IL4RP24394 825 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 MGAT5Q09328 741 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 ZBTB6Q15916 424 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 DPYSL2Q16555 572 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 CCDC80Q76M96 950 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 NLRP9Q7RTR0 991 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 RSPH3Q86UC2 560 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 CRYBG2Q8N1P7 616 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 AGGF1Q8N302 714 aaeCLIP9.95□□□□□ -0.82
COL6A3-204ENST00000392003 RNF169Q8NCN4 708 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 XAB2Q9HCS7 855 aaKnown RBP9.95□□□□□ -0.82
COL6A3-204ENST00000392003 ALG13Q9NP73 1137 aaKnown RBP9.95□□□□□ -0.82
COL6A3-204ENST00000392003 ARHGEF3Q9NR81 526 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 SLC17A7Q9P2U7 560 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 DCTN4Q9UJW0 460 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 GRID1Q9ULK0 1009 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 TMEM221A6NGB7 291 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 I3L4J1 428 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 TREHO43280 583 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 HOXD8P13378 290 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-204ENST00000392003 SULT1E1P49888 294 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 KCNT2Q6UVM3 1135 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 PACS1Q6VY07 963 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 IFNL1Q8IU54 200 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 GALNT15Q8N3T1 639 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 APBB2Q92870 758 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 FAM111AQ96PZ2 611 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 APBA2Q99767 749 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms