RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ANKRD20A3Q5VUR7 823 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 RPAINQ86UA6 219 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 VPS52Q8N1B4 723 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 FAM149B1Q96BN6 582 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 KCNK16Q96T55 309 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 GORASP1Q9BQQ3 440 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 PAAF1Q9BRP4 392 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 RHOBTB2Q9BYZ6 727 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 IL1RAPL1Q9NZN1 696 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 MAD1L1Q9Y6D9 718 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 IQCA1LA6NCM1 817 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 UNCXA6NJT0 531 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 FAM159BA6NKW6 160 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 F7P08709 466 aaPredicted RBP13.82□□□□□ -0.2
CCDC3-202ENST00000378839 PTPN1P18031 435 aaKnown RBP13.82□□□□□ -0.2
CCDC3-202ENST00000378839 CYP2B6P20813 491 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 PAX7P23759 505 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 AXLP30530 894 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 HOXC8P31273 242 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 SCNN1AP37088 669 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 RIPK1Q13546 671 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 MDH1BQ5I0G3 518 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 WLSQ5T9L3 541 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 TTC39BQ5VTQ0 682 aaPredicted RBP13.82□□□□□ -0.2
CCDC3-202ENST00000378839 STRADAQ7RTN6 431 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 HTR3CQ8WXA8 447 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 NPY6RQ99463 290 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 C20orf27Q9GZN8 174 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 WDR27A2RRH5 827 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 GABRDO14764 452 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 GBP2P32456 591 aaPredicted RBP13.81□□□□□ -0.2
CCDC3-202ENST00000378839 GMPRP36959 345 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 SERPINB4P48594 390 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 CRYBB1P53674 252 aaPredicted RBP13.81□□□□□ -0.2
CCDC3-202ENST00000378839 MAP3K7CLP57077 242 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 CDC42EP1Q00587 391 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 ZNF449Q6P9G9 518 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 MAGEC3Q8TD91 643 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 ARNTL2Q8WYA1 636 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 LPPQ93052 612 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 ALKBH8Q96BT7 664 aaKnown RBP13.81□□□□□ -0.2
CCDC3-202ENST00000378839 ZNF560Q96MR9 790 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 C2CD2LO14523 706 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 HUS1O60921 280 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 IGHA2P01877 340 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 DLDP09622 509 aaKnown RBP13.81□□□□□ -0.2
CCDC3-202ENST00000378839 TPSB2P20231 275 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 CTGFP29279 349 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 NR2C2P49116 596 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 WASHC5Q12768 1159 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 NME3Q13232 169 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 TPSAB1Q15661 275 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 SV2CQ496J9 727 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 PREPLQ4J6C6 727 aaPredicted RBP13.81□□□□□ -0.2
CCDC3-202ENST00000378839 MROH9Q5TGP6 573 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 APBB1IPQ7Z5R6 666 aaPredicted RBP13.81□□□□□ -0.2
CCDC3-202ENST00000378839 CHSY1Q86X52 802 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 PDCD7Q8N8D1 485 aaKnown RBP13.81□□□□□ -0.2
CCDC3-202ENST00000378839 ZMIZ2Q8NF64 920 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 STAMBPL1Q96FJ0 436 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 P2RY11Q96G91 374 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 SLC13A1Q9BZW2 595 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 MOCS1Q9NZB8 636 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 MYBPHLA2RUH7 354 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 YJEFN3A6XGL0 299 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 E7ENQ6 273 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 SPAG6O75602 509 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 RARBP10826 455 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 NPR3P17342 541 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 GM2AP17900 193 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 PEX19P40855 299 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 SKIV2L2P42285 1042 aaKnown RBP13.81□□□□□ -0.2
CCDC3-202ENST00000378839 PCBP1Q15365 356 aaKnown RBP eCLIP13.81□□□□□ -0.2
CCDC3-202ENST00000378839 TWF2Q6IBS0 349 aaKnown RBP13.81□□□□□ -0.2
CCDC3-202ENST00000378839 RNF139Q8WU17 664 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 TFB1MQ8WVM0 346 aaKnown RBP13.81□□□□□ -0.2
CCDC3-202ENST00000378839 SMOQ99835 787 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 FBXO6Q9NRD1 293 aaPredicted RBP13.81□□□□□ -0.2
CCDC3-202ENST00000378839 ZNF180Q9UJW8 692 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 SNX10Q9Y5X0 201 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 IKBKGQ9Y6K9 419 aa13.81□□□□□ -0.2
CCDC3-202ENST00000378839 A0A0G2JND7 137 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 M0QYT0 321 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 TRDMT1O14717 391 aaKnown RBP13.8□□□□□ -0.2
CCDC3-202ENST00000378839 DAB1O75553 588 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 LRPAP1P30533 357 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 ACADSBP45954 432 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 PURAQ00577 322 aaKnown RBP13.8□□□□□ -0.2
CCDC3-202ENST00000378839 DPYSQ14117 519 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 HEATR6Q6AI08 1181 aaKnown RBP13.8□□□□□ -0.2
CCDC3-202ENST00000378839 CLNKQ7Z7G1 428 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 TOP6BLQ8N6T0 577 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 TRPV1Q8NER1 839 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 SLC2A13Q96QE2 648 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 TSSK1BQ9BXA7 367 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 LRMDAQ9H2I8 198 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 PLLPQ9Y342 182 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 PCDHA11Q9Y5I1 949 aa13.8□□□□□ -0.2
CCDC3-202ENST00000378839 MYO18AQ92614 2054 aaKnown RBP13.8□□□□□ -0.2
CCDC3-202ENST00000378839 C17orf102A2RUQ5 167 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms