RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 IDH3AP50213 366 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 THOP1P52888 689 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 ATXN1P54253 815 aaKnown RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 MYL6P60660 151 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 CTBSQ01459 385 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 STX3Q13277 289 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 SNAPC2Q13487 334 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 CUL2Q13617 745 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 DLG2Q15700 870 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 ANKRD20A4Q4UJ75 823 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 SLC9B1Q4ZJI4 515 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 FASTKD1Q53R41 847 aaKnown RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 SPDYAQ5MJ70 313 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 CIAPIN1Q6FI81 312 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 KCNT2Q6UVM3 1135 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 KCTD6Q8NC69 237 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 MASTLQ96GX5 879 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 SLC45A3Q96JT2 553 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 RPL10LQ96L21 214 aaKnown RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 PRMT6Q96LA8 375 aaPredicted RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 OR52B2Q96RD2 323 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 TARS2Q9BW92 718 aaKnown RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 ZC3H12CQ9C0D7 883 aaKnown RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 AVENQ9NQS1 362 aaPredicted RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 PARVAQ9NVD7 372 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 TOR4AQ9NXH8 423 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 NYAP2Q9P242 653 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 NXF1Q9UBU9 619 aaKnown RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 ZC3H7BQ9UGR2 993 aaKnown RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 EMCNQ9ULC0 261 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 AP4B1Q9Y6B7 739 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 TEX264Q9Y6I9 313 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 SF3B1O75533 1304 aaKnown RBP eCLIP5.59□□□□□ -1.513e-8■■■■■ 315.9
ATG4A-204ENST00000372246 LAMA2P24043 3122 aaKnown RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 WDR64B1ANS9 1081 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 CFAP99D6REC4 459 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 GOLGA8TH3BQL2 631 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 NOP56O00567 594 aaKnown RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 KCNN4O15554 427 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 ZBTB24O43167 697 aaPredicted RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 CLIC3O95833 236 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 C4BPAP04003 597 aaKnown RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 MMP8P22894 467 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 RBL1P28749 1068 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 FDFT1P37268 417 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 RXRGP48443 463 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 SLC25A11Q02978 314 aaKnown RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 SLC18A2Q05940 514 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 MTMR1Q13613 665 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 CA9Q16790 459 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 KLHL38Q2WGJ6 581 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 TKFCQ3LXA3 575 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 MTERF2Q49AM1 385 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 PTPN20Q4JDL3 420 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 WDR44Q5JSH3 913 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 TEDDM1Q5T9Z0 273 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 N4BP2L1Q5TBK1 243 aaPredicted RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 C6orf163Q5TEZ5 329 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 TMCO4Q5TGY1 634 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 SLC9A4Q6AI14 798 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 DESI1Q6ICB0 168 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 TRNP1Q6NT89 227 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 PPP1R2P3Q6NXS1 205 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 SCYL2Q6P3W7 929 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 RPS27LQ71UM5 84 aaKnown RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 CHST15Q7LFX5 561 aaPredicted RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 CAND1Q86VP6 1230 aaKnown RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 CRLF3Q8IUI8 442 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 GPD1LQ8N335 351 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 PQLC3Q8N755 202 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 ARL10Q8N8L6 244 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 ICA1LQ8NDH6 482 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 STKLD1Q8NE28 680 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 ACVR1CQ8NER5 493 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 UBA3Q8TBC4 463 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 MFSD14AQ96MC6 490 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 CPXM1Q96SM3 734 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 PPP1R16BQ96T49 567 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 PKP2Q99959 881 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 LPIN3Q9BQK8 851 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 TRIM8Q9BZR9 551 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 MTMR12Q9C0I1 747 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 WWP1Q9H0M0 922 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 IRF2BPLQ9H1B7 796 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 RMI1Q9H9A7 625 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 CAB39LQ9H9S4 337 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 KCNK4Q9NYG8 393 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 GABBR1Q9UBS5 961 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 SFMBT1Q9UHJ3 866 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 GNEQ9Y223 722 aaKnown RBP5.59□□□□□ -1.51
ATG4A-204ENST00000372246 C10orf71Q711Q0 1435 aa5.59□□□□□ -1.51
ATG4A-204ENST00000372246 IQANK1A0A1B0GTG1 560 aa5.58□□□□□ -1.52
ATG4A-204ENST00000372246 RBM47A0AV96 593 aaKnown RBP5.58□□□□□ -1.52
ATG4A-204ENST00000372246 F8W8V4 182 aa5.58□□□□□ -1.52
ATG4A-204ENST00000372246 METTL18O95568 372 aa5.58□□□□□ -1.52
ATG4A-204ENST00000372246 MT-CO1P00395 513 aa5.58□□□□□ -1.52
ATG4A-204ENST00000372246 ITGAVP06756 1048 aa5.58□□□□□ -1.52
ATG4A-204ENST00000372246 CHRNGP07510 517 aa5.58□□□□□ -1.52
ATG4A-204ENST00000372246 GJB1P08034 283 aa5.58□□□□□ -1.52
ATG4A-204ENST00000372246 MAPTP10636 758 aaKnown RBP5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms