RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 TTC3P53804 2025 aa10.46□□□□□ -0.73
SYNE1-203ENST00000354674 COL4A6Q14031 1691 aa10.46□□□□□ -0.74
SYNE1-203ENST00000354674 TMEM189-UBE2V1I3L0A0 370 aa10.46□□□□□ -0.74
SYNE1-203ENST00000354674 RASGRF2O14827 1237 aa10.46□□□□□ -0.74
SYNE1-203ENST00000354674 B4GALT3O60512 393 aa10.46□□□□□ -0.74
SYNE1-203ENST00000354674 MTA2O94776 668 aa10.46□□□□□ -0.74
SYNE1-203ENST00000354674 PRLRP16471 622 aa10.46□□□□□ -0.74
SYNE1-203ENST00000354674 NAA20P61599 178 aa10.46□□□□□ -0.74
SYNE1-203ENST00000354674 MTMR3Q13615 1198 aa10.46□□□□□ -0.74
SYNE1-203ENST00000354674 TAF1BQ53T94 588 aaPredicted RBP10.46□□□□□ -0.74
SYNE1-203ENST00000354674 FAM182AQ5T1J6 154 aa10.46□□□□□ -0.74
SYNE1-203ENST00000354674 MON1BQ7L1V2 547 aa10.46□□□□□ -0.74
SYNE1-203ENST00000354674 PRUNE1Q86TP1 453 aa10.46□□□□□ -0.74
SYNE1-203ENST00000354674 MCOLN2Q8IZK6 566 aa10.46□□□□□ -0.74
SYNE1-203ENST00000354674 RFFLQ8WZ73 363 aa10.46□□□□□ -0.74
SYNE1-203ENST00000354674 ANKRD27Q96NW4 1050 aa10.46□□□□□ -0.74
SYNE1-203ENST00000354674 CACNG4Q9UBN1 327 aa10.46□□□□□ -0.74
SYNE1-203ENST00000354674 PCDHB7Q9Y5E2 793 aa10.46□□□□□ -0.74
SYNE1-203ENST00000354674 GRID2IPA4D2P6 1211 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 CFAP69A5D8W1 941 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 HTR3EA5X5Y0 456 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 CASTOR2A6NHX0 329 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 M0QZQ0 153 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 O00370 1275 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 DDHD2O94830 711 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 GPC5P78333 572 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 CUL1Q13616 776 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 DCLRE1AQ6PJP8 1040 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 NPAS4Q8IUM7 802 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 SRRM1Q8IYB3 904 aaKnown RBP10.45□□□□□ -0.74
SYNE1-203ENST00000354674 TMEM86AQ8N2M4 240 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 URGCPQ8TCY9 931 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 ARHGEF26Q96DR7 871 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 TBC1D13Q9NVG8 400 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 CHKBQ9Y259 395 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 ITM2BQ9Y287 266 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 STXBP5LQ9Y2K9 1186 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.45□□□□□ -0.74
SYNE1-203ENST00000354674 CYB561D2O14569 222 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 HOXA2O43364 376 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 HUS1O60921 280 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 PENKP01210 267 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-203ENST00000354674 FGGP02679 453 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 CYP11A1P05108 521 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 HALP42357 657 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 OVGP1Q12889 678 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 STILQ15468 1287 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 LCLAT1Q6UWP7 414 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 RBM44Q6ZP01 1051 aaKnown RBP10.45□□□□□ -0.74
SYNE1-203ENST00000354674 ZNF572Q7Z3I7 529 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-203ENST00000354674 SLFN11Q7Z7L1 901 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 ZNF280BQ86YH2 543 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 ADGRF2Q8IZF7 708 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 LRRC57Q8N9N7 239 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 SENP8Q96LD8 212 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 DCLRE1BQ9H816 532 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 ALG13Q9NP73 1137 aaKnown RBP10.45□□□□□ -0.74
SYNE1-203ENST00000354674 TXLNGQ9NUQ3 528 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 PRKAG3Q9UGI9 489 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 GTF3C4Q9UKN8 822 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 INPP5FQ9Y2H2 1132 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 WDR37Q9Y2I8 494 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 SIGLEC16A6NMB1 481 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 MMP8P22894 467 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 AMPD1P23109 780 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 GNL1P36915 607 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-203ENST00000354674 C1QBPQ07021 282 aaKnown RBP10.45□□□□□ -0.74
SYNE1-203ENST00000354674 TBL3Q12788 808 aaKnown RBP10.45□□□□□ -0.74
SYNE1-203ENST00000354674 PKDCCQ504Y2 493 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 ARHGAP17Q68EM7 881 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 MFSD5Q6N075 450 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 OSTM1Q86WC4 334 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 GBP7Q8N8V2 638 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-203ENST00000354674 RIN3Q8TB24 985 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 SLC35G2Q8TBE7 412 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 CPA5Q8WXQ8 436 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 MCUR1Q96AQ8 359 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 AVENQ9NQS1 362 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-203ENST00000354674 KRT82Q9NSB4 513 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 PDP2Q9P2J9 529 aa10.45□□□□□ -0.74
SYNE1-203ENST00000354674 ALPK3Q96L96 1907 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 FNDC1Q4ZHG4 1894 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-203ENST00000354674 C2orf71A6NGG8 1288 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 KRT38O76015 456 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 ASMTLO95671 621 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 CCDC166P0CW27 439 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 ZFXP17010 805 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-203ENST00000354674 EN2P19622 333 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-203ENST00000354674 LMO2P25791 158 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 ORC1Q13415 861 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 IKBKEQ14164 716 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 TIGD5Q53EQ6 642 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 SGO2Q562F6 1265 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 SH2D4BQ5SQS7 431 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 DENND1BQ6P3S1 775 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 KLHL35Q6PF15 583 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 DEFB128Q7Z7B8 93 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 PHLDB2Q86SQ0 1253 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 RHOT2Q8IXI1 618 aa10.44□□□□□ -0.74
SYNE1-203ENST00000354674 VPS52Q8N1B4 723 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms