RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ANP32BQ92688 251 aaKnown RBP2.46□□□□□ -2.02
VPS54-202ENST00000354504 ART4Q93070 314 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 UBE2FQ969M7 185 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 ARL8AQ96BM9 186 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 MAML3Q96JK9 1138 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 AGPAT1Q99943 283 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 ZFYVE21Q9BQ24 234 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 TUBB2BQ9BVA1 445 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 KLC2Q9H0B6 622 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 LRRC19Q9H756 370 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 VEZTQ9HBM0 779 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 NLRC4Q9NPP4 1024 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 DNAJC12Q9UKB3 198 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 A0A0C4DFX4 3053 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 C5orf60A6NFR6 353 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 ARVCFO00192 962 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 SART1O43290 800 aaKnown RBP2.46□□□□□ -2.02
VPS54-202ENST00000354504 HCRTO43612 131 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 BUB1O43683 1085 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 EXTL3O43909 919 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 TSPAN1O60635 241 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 FLOT1O75955 427 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 MT-CO1P00395 513 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 S100BP04271 92 aaPredicted RBP2.46□□□□□ -2.02
VPS54-202ENST00000354504 GSTM1P09488 218 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 TGFB3P10600 412 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 MMP8P22894 467 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 TACR1P25103 407 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 RAD23BP54727 409 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 CDR2Q01850 454 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 ITKQ08881 620 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 MAMLD1Q13495 774 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 BRD3Q15059 726 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 EXOC3L4Q17RC7 722 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 MAP9Q49MG5 647 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 FKBP15Q5T1M5 1219 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 C10orf76Q5T2E6 689 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 OLFML2BQ68BL8 750 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 SWSAP1Q6NVH7 229 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 OGFOD3Q6PK18 319 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 ANKRD23Q86SG2 305 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 BRSK2Q8IWQ3 736 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 AMOTL1Q8IY63 956 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 MCOLN2Q8IZK6 566 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 MFSD4AQ8N468 514 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 SLC4A11Q8NBS3 891 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 SAAL1Q96ER3 474 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 ZNF317Q96PQ6 595 aaPredicted RBP2.46□□□□□ -2.02
VPS54-202ENST00000354504 PI4K2AQ9BTU6 479 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 IFIH1Q9BYX4 1025 aaKnown RBP2.46□□□□□ -2.02
VPS54-202ENST00000354504 MAGEB5Q9BZ81 275 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 GBP3Q9H0R5 595 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 ZC3H7BQ9UGR2 993 aaKnown RBP2.46□□□□□ -2.02
VPS54-202ENST00000354504 LCMT1Q9UIC8 334 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 HOOK1Q9UJC3 728 aaKnown RBP2.46□□□□□ -2.02
VPS54-202ENST00000354504 TCFL5Q9UL49 500 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 WASF3Q9UPY6 502 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 SAR1BQ9Y6B6 198 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 COL1A2P08123 1366 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 TCF20Q9UGU0 1960 aaKnown RBP2.46□□□□□ -2.02
VPS54-202ENST00000354504 MYO18AQ92614 2054 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 A0A1B0GUA9 196 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 TMEM191CA6NGB0 347 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 PIRO00625 290 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 CHMP2AO43633 222 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 CALUO43852 315 aaPredicted RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 ZC3H11AO75152 810 aaKnown RBP eCLIP2.45□□□□□ -2.026e-8■■■■■ 27.4
VPS54-202ENST00000354504 GCNT3O95395 438 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 FTCDO95954 541 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 F2P00734 622 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 SHBGP04278 402 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 MMP3P08254 477 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 TMEM191BP0C7N4 346 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 CYP2C8P10632 490 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 CASQ1P31415 396 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 COPB2P35606 906 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 TCF7P36402 384 aaPredicted RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 BCL6P41182 706 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 FNTAP49354 379 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 PEX3P56589 373 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 TBX4P57082 545 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 RPL7AP62424 266 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 SUMO1P63165 101 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 HTRA3P83110 453 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 GAD2Q05329 585 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 MGAT5Q09328 741 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 LAMTOR4Q0VGL1 99 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 SEMA3BQ13214 749 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 ALCAMQ13740 583 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 SPDYCQ5MJ68 293 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 MAP3K21Q5TCX8 1036 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 SFMBT2Q5VUG0 894 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 ESRP1Q6NXG1 681 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 UNQ6494/PRO21346Q6UXR6 183 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 ERO1BQ86YB8 467 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 FBXO16Q8IX29 292 aaPredicted RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 ZNF683Q8IZ20 524 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 PDCL2Q8N4E4 241 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 ANKRD13CQ8N6S4 541 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 SHKBP1Q8TBC3 707 aa2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms