RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 AP2B1P63010 937 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 PSMD5Q16401 504 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 RAP1GAP2Q684P5 730 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 ARID3BQ8IVW6 561 aaPredicted RBP15.3■□□□□ 0.04
COL17A1-201ENST00000353479 RUBCNLQ9H714 662 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 RIC8BQ9NVN3 520 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 KIF17Q9P2E2 1029 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 SAE1Q9UBE0 346 aaPredicted RBP15.3■□□□□ 0.04
COL17A1-201ENST00000353479 TRHDEQ9UKU6 1024 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 LOC102724159A0A0B4J2E5 919 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 WDR27A2RRH5 827 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 APOC4-APOC2K7ER74 178 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 CAND2O75155 1236 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 APOC2P02655 101 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 RBL1P28749 1068 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 RPL21P46778 160 aaKnown RBP15.3■□□□□ 0.04
COL17A1-201ENST00000353479 PWP2Q15269 919 aaKnown RBP15.3■□□□□ 0.04
COL17A1-201ENST00000353479 CACUL1Q86Y37 369 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 MYO1HQ8N1T3 1032 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 SLAIN1Q8ND83 568 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 TEKT4Q8WW24 435 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 BRI3BPQ8WY22 251 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 MTBPQ96DY7 904 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 CHST7Q9NS84 486 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 SHOC2Q9UQ13 582 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 AURKCQ9UQB9 309 aa15.3■□□□□ 0.04
COL17A1-201ENST00000353479 ZNF142P52746 1687 aaPredicted RBP15.29■□□□□ 0.04
COL17A1-201ENST00000353479 SELPP16109 830 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 MGAT1P26572 445 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 OVGP1Q12889 678 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 STARD3Q14849 445 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 DDR2Q16832 855 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 TSHZ1Q6ZSZ6 1077 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 C11orf96Q7Z7L8 435 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 CYP4F12Q9HCS2 524 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 NOP53Q9NZM5 478 aaKnown RBP15.29■□□□□ 0.04
COL17A1-201ENST00000353479 UBA2Q9UBT2 640 aaPredicted RBP15.29■□□□□ 0.04
COL17A1-201ENST00000353479 PADI3Q9ULW8 664 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 FBXW4P57775 412 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 DDX39BQ13838 428 aaKnown RBP15.29■□□□□ 0.04
COL17A1-201ENST00000353479 PPP1R26Q5T8A7 1209 aaPredicted RBP15.29■□□□□ 0.04
COL17A1-201ENST00000353479 C12orf56Q8IXR9 622 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 KCNV2Q8TDN2 545 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 MAF1Q9H063 256 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 SEMA4AQ9H3S1 761 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 MTO1Q9Y2Z2 717 aaKnown RBP15.29■□□□□ 0.04
COL17A1-201ENST00000353479 TOPAZ1Q8N9V7 1692 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 RBAK-RBAKDNI3L0D1 243 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 MGAT5Q09328 741 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 CRHR2Q13324 411 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 PDCD2Q16342 344 aaPredicted RBP15.29■□□□□ 0.04
COL17A1-201ENST00000353479 HIST2H2ACQ16777 129 aaPredicted RBP15.29■□□□□ 0.04
COL17A1-201ENST00000353479 HSP90AA5PQ58FG0 334 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 HIST2H2AA3Q6FI13 130 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 GPR152Q8TDT2 470 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 SEC16BQ96JE7 1060 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 GPAMQ9HCL2 828 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 DNMT3LQ9UJW3 386 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 AIM2O14862 343 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 SEPT4O43236 478 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 TLL1O43897 1013 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 SOX11P35716 441 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 ARL2P36404 184 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 BTKQ06187 659 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 NECAB2Q7Z6G3 386 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 SEMA4DQ92854 862 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 PCDHA2Q9Y5H9 948 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 CNTNAP1P78357 1384 aa15.29■□□□□ 0.04
COL17A1-201ENST00000353479 A0A0U1RQJ8 604 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 SMIM28A0A1B0GU29 152 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 CES2O00748 559 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 SKAP2O75563 359 aaPredicted RBP15.28■□□□□ 0.04
COL17A1-201ENST00000353479 HDCP19113 662 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 TUSC3Q13454 348 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 LLGL2Q6P1M3 1020 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 IFNEQ86WN2 208 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 TOP6BLQ8N6T0 577 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 ASAH2Q9NR71 780 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 STOML1Q9UBI4 398 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 HACD1B0YJ81 288 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 PECAM1P16284 738 aaPredicted RBP15.28■□□□□ 0.04
COL17A1-201ENST00000353479 CSHL1Q14406 222 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 NPNTQ6UXI9 565 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 NKX2-3Q8TAU0 364 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 SPATA20Q8TB22 786 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 DHX33Q9H6R0 707 aaKnown RBP15.28■□□□□ 0.04
COL17A1-201ENST00000353479 DDX20Q9UHI6 824 aaKnown RBP15.28■□□□□ 0.04
COL17A1-201ENST00000353479 SCOCQ9UIL1 159 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 CA12O43570 354 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 DGKIO75912 1065 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 IGSF6O95976 241 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 NOMO3P69849 1222 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 EFL1Q7Z2Z2 1120 aaKnown RBP15.28■□□□□ 0.04
COL17A1-201ENST00000353479 OOSP2Q86WS3 158 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 UNKQ9C0B0 810 aaKnown RBP15.28■□□□□ 0.04
COL17A1-201ENST00000353479 MAGEB16A2A368 324 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 ATP13A4Q4VNC1 1196 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 ERAP2Q6P179 960 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 CES3Q6UWW8 571 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 PRUNE1Q86TP1 453 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms