RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 RFX8Q6ZV50 586 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 BEND5Q7L4P6 421 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 HDXQ7Z353 690 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 MIB1Q86YT6 1006 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 FAM71DQ8N9W8 422 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 TTC13Q8NBP0 860 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 ZNF461Q8TAF7 563 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 GRK7Q8WTQ7 553 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 C2orf15Q8WU43 125 aaKnown RBP4.29□□□□□ -1.72
MCF2-201ENST00000338585 CAVIN3Q969G5 261 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 NTAN1Q96AB6 310 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 SPATA17Q96L03 361 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 RUNDC3BQ96NL0 473 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 SLC9A7Q96T83 725 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 OXCT2Q9BYC2 517 aaPredicted RBP4.29□□□□□ -1.72
MCF2-201ENST00000338585 SIK2Q9H0K1 926 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 CCSER2Q9H7U1 834 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 ALG13Q9NP73 1137 aaKnown RBP4.29□□□□□ -1.72
MCF2-201ENST00000338585 DNAJC17Q9NVM6 304 aaKnown RBP4.29□□□□□ -1.72
MCF2-201ENST00000338585 RRN3Q9NYV6 651 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 AFF4Q9UHB7 1163 aaKnown RBP4.29□□□□□ -1.72
MCF2-201ENST00000338585 HPCAL4Q9UM19 191 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 DRG1Q9Y295 367 aaKnown RBP4.29□□□□□ -1.72
MCF2-201ENST00000338585 YIPF1Q9Y548 306 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 INSL6Q9Y581 213 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 SLC4A7Q9Y6M7 1214 aa4.29□□□□□ -1.72
MCF2-201ENST00000338585 H3BRJ5 948 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 H7C0C1 242 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 EEF2KO00418 725 aaKnown RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 MCF2LO15068 1137 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 TLL1O43897 1013 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 MFSD11O43934 449 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 LILRB3O75022 631 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 PAGE1O75459 146 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 LRIG2O94898 1065 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 RTN3O95197 1032 aaPredicted RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 MOCS2O96007 188 aaPredicted RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 F9P00740 461 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 HMBSP08397 361 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 CNPP09543 421 aaKnown RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 RARGP13631 454 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 HMGA1P17096 107 aaKnown RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 CAPN2P17655 700 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 TGM2P21980 687 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 RBL1P28749 1068 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 RPL22P35268 128 aaKnown RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 CHKAP35790 457 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 PPM1AP35813 382 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 ARL4AP40617 200 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 ATP5OP48047 213 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 ITGA8P53708 1063 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 FAM193AP78312 1265 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 EFEMP1Q12805 493 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 GPS1Q13098 491 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 RAB33AQ14088 237 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 DPYSQ14117 519 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 UAP1Q16222 522 aaPredicted RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 P3H1Q32P28 736 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 ARTNQ5T4W7 220 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 IZUMO3Q5VZ72 239 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 PSRC1Q6PGN9 363 aaPredicted RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 DARS2Q6PI48 645 aaKnown RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 TMC3Q7Z5M5 1100 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 VSIG1Q86XK7 387 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 PSTKQ8IV42 348 aaKnown RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 NPWQ8N729 165 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 EIF1ADQ8N9N8 165 aaKnown RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 HERVK_113Q902F9 699 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 ART4Q93070 314 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 SNF8Q96H20 258 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 FMO2Q99518 471 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 ZBP1Q9H171 429 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 ADAM7Q9H2U9 754 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 MRPL17Q9NRX2 175 aaKnown RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.28□□□□□ -1.72
MCF2-201ENST00000338585 DTLQ9NZJ0 730 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 OR12D3Q9UGF7 316 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 FEZ2Q9UHY8 353 aaPredicted RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 PCDHB12Q9Y5F1 795 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 MYO7AQ13402 2215 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 PLXNA4Q9HCM2 1894 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 ZNF487B1APH4 448 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 H3BQF6 201 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 PRRG1O14668 218 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 DCLK1O15075 740 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 ZDHHC11BP0C7U3 371 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 SRGAP2BP0DMP2 458 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 ERCC2P18074 760 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 DNAJB1P25685 340 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 GBP1P32455 592 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 CTNNB1P35222 781 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 HSPA9P38646 679 aaKnown RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 TUFMP49411 452 aaKnown RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 TPI1P60174 286 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 ERVFC1P60507 584 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 LMNB2Q03252 620 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 GAD2Q05329 585 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 DHX9Q08211 1270 aaKnown RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 TWF1Q12792 350 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 CALCOCO2Q13137 446 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms