RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 EIF4EBP2Q13542 120 aaPredicted RBP16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 ADGRF1Q5T601 910 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 SND1Q7KZF4 910 aaKnown RBP eCLIP16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 FAM217AQ8IXS0 508 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 CPXM2Q8N436 756 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 NAT16Q8N8M0 369 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 TMEM105Q8N8V8 129 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 RXFP2Q8WXD0 754 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 NT5C3BQ969T7 300 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 EXOC4Q96A65 974 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 ZNF653Q96CK0 615 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 MCEEQ96PE7 176 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 OSBPL6Q9BZF3 934 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 DEF6Q9H4E7 631 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 PIGVQ9NUD9 493 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 PLK2Q9NYY3 685 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 MARK1Q9P0L2 795 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 STOML2Q9UJZ1 356 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 GOLGA6L7A0A1B0GV03 622 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 TCRBV5S1A1TA0A578 114 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 ANKRD62A6NC57 917 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 C2CD4BA6NLJ0 364 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 SIGLEC16A6NMB1 481 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 NCAM2O15394 837 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 CYBBP04839 570 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 SLC2A3P11169 496 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 ABCB4P21439 1286 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 SDC4P31431 198 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 RFC1P35251 1148 aaPredicted RBP16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 SLC6A11P48066 632 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 ATP11AP98196 1134 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 KDSRQ06136 332 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 GRSF1Q12849 480 aaKnown RBP eCLIP16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 CDO1Q16878 200 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 NADSYN1Q6IA69 706 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 DCUN1D2Q6PH85 259 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 ZNF687Q8N1G0 1237 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 ATP6V0D2Q8N8Y2 350 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 AZIN2Q96A70 460 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 TRIM11Q96F44 468 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 ISCUQ9H1K1 167 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 FBRSL1Q9HCM7 1045 aaKnown RBP16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 SLC12A6Q9UHW9 1150 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 XPO7Q9UIA9 1087 aaKnown RBP16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 MIA3Q5JRA6 1907 aa16.5■□□□□ 0.23
CCDC28A-201ENST00000332797 KMT2EQ8IZD2 1858 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 ADCY5O95622 1261 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 F9P00740 461 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 GPD1P21695 349 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 AVPR2P30518 371 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 SLC6A4P31645 630 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 ATXN1P54253 815 aaKnown RBP16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 RPL7AP62424 266 aaKnown RBP16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 GFPT1Q06210 699 aaPredicted RBP16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 LRRC32Q14392 662 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 PPP2R5DQ14738 602 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 C15orf59Q2T9L4 293 aaPredicted RBP16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 FAM133BQ5BKY9 247 aaKnown RBP16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 TMEM196Q5HYL7 178 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 CCDC122Q5T0U0 273 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 FYB2Q5VWT5 728 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 FSTL4Q6MZW2 842 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 ALKBH5Q6P6C2 394 aaKnown RBP16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 RFWD3Q6PCD5 774 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 TC2NQ8N9U0 490 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 DDI1Q8WTU0 396 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 PGAP3Q96FM1 320 aaPredicted RBP16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 P2RY11Q96G91 374 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 BTN2A3PQ96KV6 586 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 XPO6Q96QU8 1125 aaKnown RBP16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 CHP1Q99653 195 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 DDX50Q9BQ39 737 aaKnown RBP16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 LMAN1LQ9HAT1 526 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 RBM12Q9NTZ6 932 aaKnown RBP16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 PARVAQ9NVD7 372 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 DNAJC17Q9NVM6 304 aaKnown RBP16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 MYO1AQ9UBC5 1043 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 CNOT8Q9UFF9 292 aaKnown RBP16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 MYOFQ9NZM1 2061 aa16.49■□□□□ 0.23
CCDC28A-201ENST00000332797 SSU72P8A0A1W2PR75 194 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 KCNU1A8MYU2 1149 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 AKR1B10O60218 316 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 TULP3O75386 442 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 EGFP01133 1207 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 PENKP01210 267 aaPredicted RBP16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 MYBL1P10243 752 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 CHRNB1P11230 501 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 RDXP35241 583 aaKnown RBP16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 PTPN9P43378 593 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 CXCR3P49682 368 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 MAPK8IP2Q13387 824 aaPredicted RBP16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 MAMLD1Q13495 774 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 CCDC14Q49A88 953 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 MPPE1Q53F39 396 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 PPP1R15BQ5SWA1 713 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 PLEKHA7Q6IQ23 1121 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 CHSY1Q86X52 802 aa16.48■□□□□ 0.23
CCDC28A-201ENST00000332797 ETFBKMTQ8IXQ9 262 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms