RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 TMLHEQ9NVH6 421 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 ASIC5Q9NY37 505 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 NDUFAF4Q9P032 175 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 LUZP4Q9P127 313 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 SEMA5BQ9P283 1151 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 DAPP1Q9UN19 280 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 ZBTB1Q9Y2K1 713 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 PCDHB7Q9Y5E2 793 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 DGKBQ9Y6T7 804 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 CECR2Q9BXF3 1484 aa3.83□□□□□ -1.8
HMGB1-201ENST00000326004 HMX3A6NHT5 357 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 C3orf70A6NLC5 250 aaPredicted RBP3.82□□□□□ -1.8
HMGB1-201ENST00000326004 SLC38A8A6NNN8 435 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 TTC34A8MYJ7 566 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 KIF28PB7ZC32 967 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 M0QZQ0 153 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 CREB3O43889 395 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 GCATO75600 419 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 IGLV2-14P01704 120 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 SLC3A2P08195 630 aaKnown RBP3.82□□□□□ -1.8
HMGB1-201ENST00000326004 ALADP13716 330 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 SERPINA4P29622 427 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 WDR5P61964 334 aaKnown RBP3.82□□□□□ -1.8
HMGB1-201ENST00000326004 RAE1P78406 368 aaKnown RBP3.82□□□□□ -1.8
HMGB1-201ENST00000326004 BIRC3Q13489 604 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 KCNB1Q14721 858 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 MFSD13AQ14CX5 517 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 ADCK5Q3MIX3 580 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 CERKLQ49MI3 558 aaPredicted RBP3.82□□□□□ -1.8
HMGB1-201ENST00000326004 LCE5AQ5TCM9 118 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 TMEM65Q6PI78 240 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 DCDC5Q6ZRR9 648 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 ARHGEF25Q86VW2 580 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 C3orf49Q96BT1 292 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 GCC1Q96CN9 775 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 PRR11Q96HE9 360 aaPredicted RBP3.82□□□□□ -1.8
HMGB1-201ENST00000326004 MRIQ9BWK5 157 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 ADGRE3Q9BY15 652 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 BRD8Q9H0E9 1235 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 RIOX1Q9H6W3 641 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 SERGEFQ9UGK8 458 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 MAFFQ9ULX9 164 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 GPR52Q9Y2T5 361 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 PCDHB2Q9Y5E7 798 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 PCDHGB3Q9Y5G1 929 aa3.82□□□□□ -1.8
HMGB1-201ENST00000326004 TCRBV5S1A1TA0A578 114 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 MBD3L5A6NJ08 208 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-201ENST00000326004 H0Y3Z8 333 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 CLIC1O00299 241 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 FYB1O15117 783 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 C1QL1O75973 258 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 NUDT3O95989 172 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 ATF7P17544 494 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-201ENST00000326004 SLC8A1P32418 973 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 ADD2P35612 726 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 AARSP49588 968 aaKnown RBP eCLIP3.81□□□□□ -1.8
HMGB1-201ENST00000326004 HMGA2P52926 109 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 RBM6P78332 1123 aaKnown RBP3.81□□□□□ -1.8
HMGB1-201ENST00000326004 TLE3Q04726 772 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 EFR3AQ14156 821 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 CNGA3Q16281 694 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 HSP90AB4PQ58FF6 505 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 ANKRD45Q5TZF3 282 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 ANKRD40Q6AI12 368 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 FCRLBQ6BAA4 426 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 DGAT2L7PQ6IED9 249 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 WDR93Q6P2C0 686 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 C16orf89Q6UX73 402 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 MOGAT3Q86VF5 341 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 CERS3Q8IU89 383 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 BOLLQ8N9W6 283 aaKnown RBP3.81□□□□□ -1.8
HMGB1-201ENST00000326004 FAM98AQ8NCA5 519 aaKnown RBP3.81□□□□□ -1.8
HMGB1-201ENST00000326004 MCRS1Q96EZ8 462 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 MECRQ9BV79 373 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 TWSG1Q9GZX9 223 aa3.81□□□□□ -1.8
HMGB1-201ENST00000326004 SIRT4Q9Y6E7 314 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-201ENST00000326004 TBC1D3DA0A087WVF3 549 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 TBC1D3IA0A087WXS9 549 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 TBC1D3EA0A087X179 549 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 TBC1D3KA0A087X1G2 549 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 TBC1D3BA6NDS4 549 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 TBC1D3FA6NER0 549 aaPredicted RBP3.8□□□□□ -1.8
HMGB1-201ENST00000326004 TBC1D3LB9A6J9 549 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 TMEM232C9JQI7 657 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 TFRCP02786 760 aaKnown RBP3.8□□□□□ -1.8
HMGB1-201ENST00000326004 ALDOAP04075 364 aaKnown RBP3.8□□□□□ -1.8
HMGB1-201ENST00000326004 TK1P04183 234 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 CYP3A4P08684 503 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 TBC1D3HP0C7X1 549 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 GRK5P34947 590 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 PAPOLAP51003 745 aaKnown RBP3.8□□□□□ -1.8
HMGB1-201ENST00000326004 ACTR2P61160 394 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 RPL15P61313 204 aaKnown RBP3.8□□□□□ -1.8
HMGB1-201ENST00000326004 TAF5Q15542 800 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 SMAD1Q15797 465 aaKnown RBP3.8□□□□□ -1.8
HMGB1-201ENST00000326004 PROSER3Q2NL68 480 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 GALNTL6Q49A17 601 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 GLE1Q53GS7 698 aaKnown RBP3.8□□□□□ -1.8
HMGB1-201ENST00000326004 FBXO47Q5MNV8 452 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 TBC1D3GQ6DHY5 549 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms