RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 PAF1Q8N7H5 531 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 ZBED3Q96IU2 234 aaPredicted RBP10.84□□□□□ -0.67
COL3A1-202ENST00000317840 SCYL1Q96KG9 808 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 C7orf26Q96N11 449 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 EBNA1BP2Q99848 306 aaKnown RBP10.84□□□□□ -0.67
COL3A1-202ENST00000317840 SDCBP2Q9H190 292 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 PCDH18Q9HCL0 1135 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 KLHL8Q9P2G9 620 aaPredicted RBP10.84□□□□□ -0.67
COL3A1-202ENST00000317840 PDP2Q9P2J9 529 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 BARX2Q9UMQ3 279 aaPredicted RBP10.84□□□□□ -0.67
COL3A1-202ENST00000317840 INPP5FQ9Y2H2 1132 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 RPS6KL1Q9Y6S9 549 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 SLC15A5A6NIM6 579 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 TPP1O14773 563 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 KIF3CO14782 793 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 DCXO43602 365 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 ATP9BO43861 1147 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 TM7SF2O76062 418 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 KLHL2O95198 593 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 ARIH2O95376 493 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 METTL18O95568 372 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 MX2P20592 715 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 GPD2P43304 727 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 BEX3Q00994 111 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 CDCA2Q69YH5 1023 aaPredicted RBP10.84□□□□□ -0.67
COL3A1-202ENST00000317840 USP50Q70EL3 339 aaPredicted RBP10.84□□□□□ -0.67
COL3A1-202ENST00000317840 PCDH19Q8TAB3 1148 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 MED10Q9BTT4 135 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 RNPEPQ9H4A4 650 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 MROH8Q9H579 483 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 SPC25Q9HBM1 224 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 MAN1C1Q9NR34 630 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.84□□□□□ -0.67
COL3A1-202ENST00000317840 PIN4Q9Y237 131 aaKnown RBP10.84□□□□□ -0.67
COL3A1-202ENST00000317840 HES2Q9Y543 173 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 TCRBV5S1A1TA0A578 114 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 GPR25O00155 361 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 AHCYL1O43865 530 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 B4GALT4O60513 344 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 DNAJC6O75061 913 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 CILPO75339 1184 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 MLH1P40692 756 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 TNFAIP2Q03169 654 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 PEX6Q13608 980 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 SPDYAQ5MJ70 313 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 VWA5B1Q5TIE3 1220 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 DHRS4Q9BTZ2 278 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 ZCWPW1Q9H0M4 648 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 TLE6Q9H808 572 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 POPDC2Q9HBU9 364 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 DPP3Q9NY33 737 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 AP4E1Q9UPM8 1137 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 FIS1Q9Y3D6 152 aa10.84□□□□□ -0.67
COL3A1-202ENST00000317840 COL2A1P02458 1487 aaPredicted RBP10.83□□□□□ -0.68
COL3A1-202ENST00000317840 GOLGA8QA0A0J9YX86 632 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 GOLGA8OA6NCC3 632 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 C2CD4BA6NLJ0 364 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 GOLGA8NF8WBI6 632 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 USP12O75317 370 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 DGKIO75912 1065 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 CSPG5O95196 566 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 TGM2P21980 687 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 MGAT1P26572 445 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 CDH5P33151 784 aaPredicted RBP10.83□□□□□ -0.68
COL3A1-202ENST00000317840 CA8P35219 290 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 GTF2A2P52657 109 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 ATXN1P54253 815 aaKnown RBP10.83□□□□□ -0.68
COL3A1-202ENST00000317840 NME3Q13232 169 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 LBRQ14739 615 aaKnown RBP10.83□□□□□ -0.68
COL3A1-202ENST00000317840 RALGPS1Q5JS13 557 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 NET1Q7Z628 596 aaPredicted RBP10.83□□□□□ -0.68
COL3A1-202ENST00000317840 PIP4K2CQ8TBX8 421 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 PCYT2Q99447 389 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 LGMNQ99538 433 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 OSMRQ99650 979 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 NRDE2Q9H7Z3 1164 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 PRMT7Q9NVM4 692 aaPredicted RBP10.83□□□□□ -0.68
COL3A1-202ENST00000317840 PPM1HQ9ULR3 514 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 TAF1LQ8IZX4 1826 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 BTBD19C9JJ37 291 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 GLRA3O75311 464 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 SNUPNO95149 360 aaKnown RBP10.83□□□□□ -0.68
COL3A1-202ENST00000317840 NPTXRO95502 500 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 SERPINA6P08185 405 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 CYP2C9P11712 490 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 TNS4Q8IZW8 715 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 MZB1Q8WU39 189 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 CMTM5Q96DZ9 223 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 MINDY3Q9H8M7 445 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 PNPOQ9NVS9 261 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 SIX4Q9UIU6 781 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 GLTPD2A6NH11 291 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 SDR42E2A6NKP2 422 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 ABLIM1O14639 778 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 MAGEC1O60732 1142 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 TRPA1O75762 1119 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 ERVK-10P10266 1014 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 RALBP11234 206 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 PPIL2Q13356 520 aa10.83□□□□□ -0.68
COL3A1-202ENST00000317840 PPM1JQ5JR12 505 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms