RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 USP39Q53GS9 565 aaKnown RBP19.62■□□□□ 0.73
UPF1-201ENST00000262803 ERMARDQ5T6L9 678 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 TMC3Q7Z5M5 1100 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 SH3RF1Q7Z6J0 888 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 C11orf96Q7Z7L8 435 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 METTL3Q86U44 580 aaKnown RBP19.62■□□□□ 0.73
UPF1-201ENST00000262803 JADE3Q92613 823 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 PCDH9Q9HC56 1237 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 DMAP1Q9NPF5 467 aaPredicted RBP19.62■□□□□ 0.73
UPF1-201ENST00000262803 KCNQ5Q9NR82 932 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 PIK3CDO00329 1044 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 OPLAHO14841 1288 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 TAL1P17542 331 aaPredicted RBP19.62■□□□□ 0.73
UPF1-201ENST00000262803 CRABP2P29373 138 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 GNA13Q14344 377 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 PLCL1Q15111 1095 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 SLC45A4Q5BKX6 768 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 MTDHQ86UE4 582 aaKnown RBP19.62■□□□□ 0.73
UPF1-201ENST00000262803 RPRD1BQ9NQG5 326 aaKnown RBP19.62■□□□□ 0.73
UPF1-201ENST00000262803 LRRC10BA6NIK2 292 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 FAM86B1E9PN63 330 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 FAM86B2P0C5J1 330 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 SOX6P35712 828 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 SOX10P56693 466 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 PRKAA1Q13131 559 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 PGM5Q15124 567 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 CCDC153Q494R4 210 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 RXFP2Q8WXD0 754 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 IL1RAPL1Q9NZN1 696 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 DNPEPQ9ULA0 475 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 CES2O00748 559 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 RAD51BO15315 384 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 OR56A5P0C7T3 313 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 AQP5P55064 265 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 MFSD10Q14728 455 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 GRTP1Q5TC63 336 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 SHOC2Q9UQ13 582 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 XPO1O14980 1071 aaKnown RBP19.61■□□□□ 0.73
UPF1-201ENST00000262803 RAMP2O60895 175 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 SLITRK3O94933 977 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 PLOD1Q02809 727 aaPredicted RBP19.61■□□□□ 0.73
UPF1-201ENST00000262803 C3orf67Q6ZVT6 689 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 FAM131BQ86XD5 332 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 GPC2Q8N158 579 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 PPP1R16AQ96I34 528 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 DDX43Q9NXZ2 648 aaKnown RBP19.61■□□□□ 0.73
UPF1-201ENST00000262803 VIL1P09327 827 aaKnown RBP19.61■□□□□ 0.73
UPF1-201ENST00000262803 CCDC159P0C7I6 412 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 SERPINB3P29508 390 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 GCNT1Q02742 428 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 BTKQ06187 659 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 MPP3Q13368 585 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 IYDQ6PHW0 289 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 ARHGEF19Q8IW93 802 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 IARS2Q9NSE4 1012 aaKnown RBP19.61■□□□□ 0.73
UPF1-201ENST00000262803 V9GYQ6 96 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 DEPDC5O75140 1603 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 PDHXO00330 501 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 GTF2E2P29084 291 aaKnown RBP19.61■□□□□ 0.73
UPF1-201ENST00000262803 MAPK8P45983 427 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 NCF4Q15080 339 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 SPANXN3Q5MJ09 141 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 CCDC149Q6ZUS6 474 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 CREG2Q8IUH2 290 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 STK40Q8N2I9 435 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 AENQ8WTP8 325 aaKnown RBP19.61■□□□□ 0.73
UPF1-201ENST00000262803 INPP5DQ92835 1189 aa19.61■□□□□ 0.73
UPF1-201ENST00000262803 MAGEB10Q96LZ2 347 aaPredicted RBP19.61■□□□□ 0.73
UPF1-201ENST00000262803 IRX1P78414 480 aaPredicted RBP19.6■□□□□ 0.73
UPF1-201ENST00000262803 DSG1Q02413 1049 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 SCUBE1Q8IWY4 988 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 MICU2Q8IYU8 434 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 QRFPRQ96P65 431 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 NMRAL1Q9HBL8 299 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 DDX20Q9UHI6 824 aaKnown RBP19.6■□□□□ 0.73
UPF1-201ENST00000262803 DNAJC16Q9Y2G8 782 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 TBKBP1A7MCY6 615 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 RAG1P15918 1043 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 SERPINB5P36952 375 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 ATAD3BQ5T9A4 648 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 NT5DC3Q86UY8 548 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 REPS2Q8NFH8 660 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 CSGALNACT1Q8TDX6 532 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 TMEM159Q96B96 161 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 PPP1R10Q96QC0 940 aaKnown RBP19.6■□□□□ 0.73
UPF1-201ENST00000262803 MROH7Q68CQ1 1323 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 ADGRA3Q8IWK6 1321 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 BAZ2BQ9UIF8 2168 aaKnown RBP19.6■□□□□ 0.73
UPF1-201ENST00000262803 TPST1O60507 370 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 DDHD2O94830 711 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 ATP6V1B1P15313 513 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 CALB2P22676 271 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 YWHAQP27348 245 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 RPL21P46778 160 aaKnown RBP19.6■□□□□ 0.73
UPF1-201ENST00000262803 ZNF844Q08AG5 666 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 ATP6AP1LQ52LC2 224 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 ZNF655Q8N720 491 aaPredicted RBP19.6■□□□□ 0.73
UPF1-201ENST00000262803 PDP2Q9P2J9 529 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 CRYL1Q9Y2S2 319 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 BNC2Q6ZN30 1099 aaPredicted RBP19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms