RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 TMEM62Q0P6H9 643 aa13.4□□□□□ -0.26
SNX1-201ENST00000261889 TBL3Q12788 808 aaKnown RBP13.4□□□□□ -0.26
SNX1-201ENST00000261889 TMEM132BQ14DG7 1078 aa13.4□□□□□ -0.26
SNX1-201ENST00000261889 DUOXA2Q1HG44 320 aa13.4□□□□□ -0.26
SNX1-201ENST00000261889 ABHD15Q6UXT9 468 aa13.4□□□□□ -0.26
SNX1-201ENST00000261889 FAM172AQ8WUF8 416 aa13.4□□□□□ -0.26
SNX1-201ENST00000261889 TFB1MQ8WVM0 346 aaKnown RBP13.4□□□□□ -0.26
SNX1-201ENST00000261889 OR52B2Q96RD2 323 aa13.4□□□□□ -0.26
SNX1-201ENST00000261889 PRPF18Q99633 342 aaKnown RBP13.4□□□□□ -0.26
SNX1-201ENST00000261889 ZC3H11AO75152 810 aaKnown RBP eCLIP13.4□□□□□ -0.26
SNX1-201ENST00000261889 ALDOAP04075 364 aaKnown RBP13.4□□□□□ -0.26
SNX1-201ENST00000261889 OATP04181 439 aa13.4□□□□□ -0.26
SNX1-201ENST00000261889 PGK2P07205 417 aa13.4□□□□□ -0.26
SNX1-201ENST00000261889 BPGMP07738 259 aa13.4□□□□□ -0.26
SNX1-201ENST00000261889 TPH1P17752 444 aa13.4□□□□□ -0.26
SNX1-201ENST00000261889 PMLP29590 882 aa13.4□□□□□ -0.26
SNX1-201ENST00000261889 TTLL12Q14166 644 aaPredicted RBP13.4□□□□□ -0.26
SNX1-201ENST00000261889 TLR1Q15399 786 aa13.4□□□□□ -0.26
SNX1-201ENST00000261889 ZNF781Q8N8C0 355 aa13.4□□□□□ -0.26
SNX1-201ENST00000261889 CCNYQ8ND76 341 aa13.4□□□□□ -0.26
SNX1-201ENST00000261889 DDX56Q9NY93 547 aaKnown RBP13.4□□□□□ -0.26
SNX1-201ENST00000261889 SOX13Q9UN79 622 aa13.4□□□□□ -0.26
SNX1-201ENST00000261889 APOBEC2Q9Y235 224 aaKnown RBP13.4□□□□□ -0.26
SNX1-201ENST00000261889 XPO1O14980 1071 aaKnown RBP13.39□□□□□ -0.27
SNX1-201ENST00000261889 PMM2O15305 246 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 APOEP02649 317 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 IQCF3P0C7M6 154 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 ETFBP38117 255 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 ZNF132P52740 706 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 COPAP53621 1224 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 SLC18A2Q05940 514 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 PDE1CQ14123 709 aaPredicted RBP13.39□□□□□ -0.27
SNX1-201ENST00000261889 PDK3Q15120 406 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 ACOT1Q86TX2 421 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 ARHGAP24Q8N264 748 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 AGAP2Q99490 1192 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 TIPINQ9BVW5 301 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 PORCNQ9H237 461 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 PDLIM7Q9NR12 457 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 UBAP1Q9NZ09 502 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 GMPR2Q9P2T1 348 aaKnown RBP13.39□□□□□ -0.27
SNX1-201ENST00000261889 CDH22Q9UJ99 828 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 EMCNQ9ULC0 261 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 POMPQ9Y244 141 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 GJA3Q9Y6H8 435 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 PAPSS1O43252 624 aaPredicted RBP13.39□□□□□ -0.27
SNX1-201ENST00000261889 C1QAP02745 245 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 JUNP05412 331 aaKnown RBP13.39□□□□□ -0.27
SNX1-201ENST00000261889 PRKCBP05771 671 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 PDGFRBP09619 1106 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 SUPT20HL2P0C7V6 817 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 PCSK6P29122 969 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 POLR2BP30876 1174 aaKnown RBP13.39□□□□□ -0.27
SNX1-201ENST00000261889 MAPK10P53779 464 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 PITX1P78337 314 aaPredicted RBP13.39□□□□□ -0.27
SNX1-201ENST00000261889 FOLH1Q04609 750 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 TBC1D25Q3MII6 688 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 SUPT20HL1Q3ZLR7 823 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 XKR3Q5GH77 459 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 PDPK2PQ6A1A2 396 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 LAYNQ6UX15 382 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 NAPRTQ6XQN6 538 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 MARK2Q7KZI7 788 aaKnown RBP13.39□□□□□ -0.27
SNX1-201ENST00000261889 PCGF5Q86SE9 256 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 FAM83AQ86UY5 434 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 FAM131BQ86XD5 332 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 SLC45A3Q96JT2 553 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 TEPSINQ96N21 525 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 XYLT2Q9H1B5 865 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 ANLNQ9NQW6 1124 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 KCNK4Q9NYG8 393 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 LMCD1Q9NZU5 365 aa13.39□□□□□ -0.27
SNX1-201ENST00000261889 TDRKHQ9Y2W6 561 aaKnown RBP13.39□□□□□ -0.27
SNX1-201ENST00000261889 C15orf38-AP3S2A0A0A6YYH1 394 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 TMEM233B4DJY2 109 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 E7ESA3 106 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 PPEF2O14830 753 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 LTFP02788 710 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 CDK7P50613 346 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 TRAF1Q13077 416 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 ZNF460Q14592 562 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 LRRC23Q53EV4 343 aaPredicted RBP13.38□□□□□ -0.27
SNX1-201ENST00000261889 ZNF667Q5HYK9 610 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 TEDDM1Q5T9Z0 273 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 DRICH1Q6PGQ1 229 aaPredicted RBP13.38□□□□□ -0.27
SNX1-201ENST00000261889 ARPINQ7Z6K5 226 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 TMA16Q96EY4 203 aaKnown RBP13.38□□□□□ -0.27
SNX1-201ENST00000261889 VCPIP1Q96JH7 1222 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 SNRNP25Q9BV90 132 aaKnown RBP13.38□□□□□ -0.27
SNX1-201ENST00000261889 TMEM165Q9HC07 324 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 SIX4Q9UIU6 781 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 C9JVG2 144 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 TBC1D12O60347 775 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 LCP1P13796 627 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 IL4RP24394 825 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 TMED1Q13445 227 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 TRMT5Q32P41 509 aaKnown RBP13.38□□□□□ -0.27
SNX1-201ENST00000261889 ATG16L1Q676U5 607 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 KCNT2Q6UVM3 1135 aa13.38□□□□□ -0.27
SNX1-201ENST00000261889 SDCCAG8Q86SQ7 713 aaPredicted RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms