RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 GDAP2Q9NXN4 497 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 ATP9BO43861 1147 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 PCSK2P16519 638 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 BDNFP23560 247 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 TWF1Q12792 350 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 EGFL8Q99944 293 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 SLC39A8Q9C0K1 460 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 PCYOX1Q9UHG3 505 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 FAM153AQ9UHL3 310 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 PYGBP11216 843 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 TUBP50607 506 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 MPP3Q13368 585 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 ZSCAN26Q16670 478 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 GRTP1Q5TC63 336 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 CPA6Q8N4T0 437 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 PKD2L2Q9NZM6 624 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 BAZ2AQ9UIF9 1905 aaKnown RBP14.05□□□□□ -0.16
LDLR-201ENST00000252444 PAPPA2Q9BXP8 1791 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 UBA6A0AVT1 1052 aaPredicted RBP14.05□□□□□ -0.16
LDLR-201ENST00000252444 FAM47DPA6NHR8 397 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 POLR2EP19388 210 aaKnown RBP14.05□□□□□ -0.16
LDLR-201ENST00000252444 FECHP22830 423 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 SESN2P58004 480 aaPredicted RBP14.05□□□□□ -0.16
LDLR-201ENST00000252444 DLG4P78352 724 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 PARP15Q460N3 678 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 DENND1BQ6P3S1 775 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 BBS12Q6ZW61 710 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 PALB2Q86YC2 1186 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 ASB2Q96Q27 587 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 VRTNQ9H8Y1 702 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 VCX3AQ9NNX9 186 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.05□□□□□ -0.161e-6■■□□□ 13.1
LDLR-201ENST00000252444 A0A0U1RQF3 1178 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 BMP6P22004 513 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 MIPP30301 263 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 TNFSF9P41273 254 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 MAPKAPK2P49137 400 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 YBEYP58557 167 aaPredicted RBP14.05□□□□□ -0.16
LDLR-201ENST00000252444 MGAT5Q09328 741 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 FAM183BPQ6ZVS7 135 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 PIGZQ86VD9 579 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.05□□□□□ -0.16
LDLR-201ENST00000252444 BTN2A3PQ96KV6 586 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 NUF2Q9BZD4 464 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 CDY1Q9Y6F8 540 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 DOCK2Q92608 1830 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 PITPNM1O00562 1244 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 PPP1R37O75864 691 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 MYL2P10916 166 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 CCDC130P13994 396 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 ATP4AP20648 1035 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 SERPINA4P29622 427 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 AKT1P31749 480 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 POLD2P49005 469 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 SNRPD1P62314 119 aaKnown RBP14.04□□□□□ -0.16
LDLR-201ENST00000252444 FAM46CQ5VWP2 391 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 SLC22A9Q8IVM8 553 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 PTCD2Q8WV60 388 aaKnown RBP14.04□□□□□ -0.16
LDLR-201ENST00000252444 KCTD13Q8WZ19 329 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 NXF3Q9H4D5 531 aaKnown RBP14.04□□□□□ -0.16
LDLR-201ENST00000252444 MDM4O15151 490 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 B4GALT5O43286 388 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 CLDN11O75508 207 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 ZMYND10O75800 440 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 SEC31AO94979 1220 aaKnown RBP14.04□□□□□ -0.16
LDLR-201ENST00000252444 PIK3CGP48736 1102 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 HIST2H2ACQ16777 129 aaPredicted RBP14.04□□□□□ -0.16
LDLR-201ENST00000252444 HIST2H2AA3Q6FI13 130 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 FUT10Q6P4F1 479 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 SUSD3Q96L08 255 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 UPF3AQ9H1J1 476 aaKnown RBP14.04□□□□□ -0.16
LDLR-201ENST00000252444 ZDHHC4Q9NPG8 344 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 TRMT6Q9UJA5 497 aaKnown RBP14.04□□□□□ -0.16
LDLR-201ENST00000252444 INSL6Q9Y581 213 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 CACNA1SQ13698 1873 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 TRPC5OSA6NMA1 111 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 C1QTNF3-AMACRE9PGA6 284 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 SPECC1L-ADORA2AF8WAN1 911 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 SNAI1O95863 264 aaPredicted RBP14.04□□□□□ -0.16
LDLR-201ENST00000252444 SSTR3P32745 418 aaPredicted RBP14.04□□□□□ -0.16
LDLR-201ENST00000252444 USP10Q14694 798 aaKnown RBP14.04□□□□□ -0.16
LDLR-201ENST00000252444 WDR59Q6PJI9 974 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 IRF2BP2Q7Z5L9 587 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 MIB1Q86YT6 1006 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 ELMO2Q96JJ3 720 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 ATP13A1Q9HD20 1204 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 PPFIA2O75334 1257 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 ABHD2P08910 425 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 PFKLP17858 780 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 MAPK1P28482 360 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 SLC20A2Q08357 652 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 MPPE1Q53F39 396 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 TAPT1Q6NXT6 567 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 OR5B17Q8NGF7 314 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 TMEM174Q8WUU8 243 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 LRRC19Q9H756 370 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 SMARCAL1Q9NZC9 954 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 CAPN6Q9Y6Q1 641 aa14.04□□□□□ -0.16
LDLR-201ENST00000252444 GMNCA6NCL1 334 aa14.03□□□□□ -0.16
LDLR-201ENST00000252444 TM9SF1O15321 606 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms