RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 CA9Q16790 459 aa20.8■□□□□ 0.92
SYNGAP1-227ENST00000638142 MDH1BQ5I0G3 518 aa20.8■□□□□ 0.92
SYNGAP1-227ENST00000638142 PANX3Q96QZ0 392 aa20.8■□□□□ 0.92
SYNGAP1-227ENST00000638142 THTPAQ9BU02 230 aa20.8■□□□□ 0.92
SYNGAP1-227ENST00000638142 GPAMQ9HCL2 828 aa20.8■□□□□ 0.92
SYNGAP1-227ENST00000638142 ITGA11Q9UKX5 1188 aa20.8■□□□□ 0.92
SYNGAP1-227ENST00000638142 WDR90Q96KV7 1748 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 ANPEPP15144 967 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 AOC1P19801 751 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 ALDH18A1P54886 795 aaKnown RBP20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 AP2B1P63010 937 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 TMEM132DQ14C87 1099 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 NCAPG2Q86XI2 1143 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 GATA6Q92908 595 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 MPHOSPH6Q99547 160 aaKnown RBP20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 STN1Q9H668 368 aaKnown RBP20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 MOCS1Q9NZB8 636 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 SLC7A8Q9UHI5 535 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 DCAF8L1A6NGE4 600 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 SDR42E2A6NKP2 422 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 PRR5-ARHGAP8B1AHC4 643 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 HBP1O60381 514 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 ZFXP17010 805 aaPredicted RBP20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 CYP2F1P24903 491 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 PHKA2P46019 1235 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 ARHGAP8P85298 464 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 GOLGA7BQ2TAP0 167 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 WDR75Q8IWA0 830 aaKnown RBP20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 KBTBD2Q8IY47 623 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 ADGRF2Q8IZF7 708 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 MPP5Q8N3R9 675 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 ACMSDQ8TDX5 336 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 CAMKK2Q96RR4 588 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 SPATC1LQ9H0A9 340 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 DDX43Q9NXZ2 648 aaKnown RBP20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 GJA3Q9Y6H8 435 aa20.79■□□□□ 0.92
SYNGAP1-227ENST00000638142 RGS7P49802 495 aa20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 SLC6A3Q01959 620 aa20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 POU5F1BQ06416 359 aa20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 KYAT1Q16773 422 aa20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 SLC10A6Q3KNW5 377 aa20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 PPP6R3Q5H9R7 873 aaPredicted RBP20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 RNF220Q5VTB9 566 aa20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 RFX8Q6ZV50 586 aa20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 PPP1R14CQ8TAE6 165 aa20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 SMARCAD1Q9H4L7 1026 aa20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 PIDD1Q9HB75 910 aa20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 SETSIPP0DME0 302 aa20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 NR2C2P49116 596 aa20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 RBP5P82980 135 aa20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 SEMA5AQ13591 1074 aa20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 TREML2Q5T2D2 321 aa20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 SPATA33Q96N06 139 aa20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 NR1H4Q96RI1 486 aaPredicted RBP20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 TRIM56Q9BRZ2 755 aaKnown RBP20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 IFT122Q9HBG6 1241 aa20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 SOX13Q9UN79 622 aa20.78■□□□□ 0.92
SYNGAP1-227ENST00000638142 NFKBIEO00221 500 aa20.77■□□□□ 0.92
SYNGAP1-227ENST00000638142 RAB27AP51159 221 aa20.77■□□□□ 0.92
SYNGAP1-227ENST00000638142 HDAC4P56524 1084 aa20.77■□□□□ 0.92
SYNGAP1-227ENST00000638142 EN1Q05925 392 aaPredicted RBP20.77■□□□□ 0.92
SYNGAP1-227ENST00000638142 FASTKD1Q53R41 847 aaKnown RBP20.77■□□□□ 0.92
SYNGAP1-227ENST00000638142 C1orf146Q5VVC0 180 aa20.77■□□□□ 0.92
SYNGAP1-227ENST00000638142 STEAP4Q687X5 459 aa20.77■□□□□ 0.92
SYNGAP1-227ENST00000638142 PMF1Q6P1K2 205 aa20.77■□□□□ 0.92
SYNGAP1-227ENST00000638142 MARK2Q7KZI7 788 aaKnown RBP20.77■□□□□ 0.92
SYNGAP1-227ENST00000638142 SESTD1Q86VW0 696 aa20.77■□□□□ 0.92
SYNGAP1-227ENST00000638142 KHSRPQ92945 711 aaKnown RBP eCLIP20.77■□□□□ 0.92
SYNGAP1-227ENST00000638142 QKIQ96PU8 341 aaKnown RBP eCLIP20.77■□□□□ 0.92
SYNGAP1-227ENST00000638142 SLC4A5Q9BY07 1137 aa20.77■□□□□ 0.92
SYNGAP1-227ENST00000638142 PDZD7Q9H5P4 517 aa20.77■□□□□ 0.92
SYNGAP1-227ENST00000638142 NDE1Q9NXR1 346 aa20.77■□□□□ 0.92
SYNGAP1-227ENST00000638142 CACNA2D1P54289 1103 aa20.77■□□□□ 0.91
SYNGAP1-227ENST00000638142 DPYSL2Q16555 572 aa20.77■□□□□ 0.91
SYNGAP1-227ENST00000638142 AMHR2Q16671 573 aa20.77■□□□□ 0.91
SYNGAP1-227ENST00000638142 PKDCCQ504Y2 493 aa20.77■□□□□ 0.91
SYNGAP1-227ENST00000638142 DALRD3Q5D0E6 543 aaKnown RBP20.77■□□□□ 0.91
SYNGAP1-227ENST00000638142 TMCO4Q5TGY1 634 aa20.77■□□□□ 0.91
SYNGAP1-227ENST00000638142 ZCCHC23Q6ZST2 131 aa20.77■□□□□ 0.91
SYNGAP1-227ENST00000638142 TMEM110Q86TL2 294 aa20.77■□□□□ 0.91
SYNGAP1-227ENST00000638142 C12orf29Q8N999 325 aa20.77■□□□□ 0.91
SYNGAP1-227ENST00000638142 PIWIL2Q8TC59 973 aaKnown RBP20.77■□□□□ 0.91
SYNGAP1-227ENST00000638142 CLPTM1LQ96KA5 538 aa20.77■□□□□ 0.91
SYNGAP1-227ENST00000638142 EBF4Q9BQW3 602 aa20.77■□□□□ 0.91
SYNGAP1-227ENST00000638142 CPSF2Q9P2I0 782 aaKnown RBP20.77■□□□□ 0.91
SYNGAP1-227ENST00000638142 FKBP6O75344 327 aa20.76■□□□□ 0.91
SYNGAP1-227ENST00000638142 ALDH1A2O94788 518 aa20.76■□□□□ 0.91
SYNGAP1-227ENST00000638142 SNX16P57768 344 aa20.76■□□□□ 0.91
SYNGAP1-227ENST00000638142 GBE1Q04446 702 aa20.76■□□□□ 0.91
SYNGAP1-227ENST00000638142 MBLAC2Q68D91 279 aa20.76■□□□□ 0.91
SYNGAP1-227ENST00000638142 LRRN4Q8WUT4 740 aa20.76■□□□□ 0.91
SYNGAP1-227ENST00000638142 PDP2Q9P2J9 529 aa20.76■□□□□ 0.91
SYNGAP1-227ENST00000638142 KLHL33A6NCF5 533 aa20.76■□□□□ 0.91
SYNGAP1-227ENST00000638142 GLRA3O75311 464 aa20.76■□□□□ 0.91
SYNGAP1-227ENST00000638142 GSRP00390 522 aa20.76■□□□□ 0.91
SYNGAP1-227ENST00000638142 MLNP12872 115 aa20.76■□□□□ 0.91
SYNGAP1-227ENST00000638142 DSG1Q02413 1049 aa20.76■□□□□ 0.91
SYNGAP1-227ENST00000638142 BIRC2Q13490 618 aa20.76■□□□□ 0.91
SYNGAP1-227ENST00000638142 UBAP2LQ14157 1087 aaKnown RBP20.76■□□□□ 0.91
SYNGAP1-227ENST00000638142 MTHFD1LQ6UB35 978 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms