RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 ZNF473Q8WTR7 871 aaKnown RBP22.85■■□□□ 1.25
PNKP-220ENST00000627232 ATXN2LQ8WWM7 1075 aaKnown RBP22.85■■□□□ 1.25
PNKP-220ENST00000627232 MAML1Q92585 1016 aa22.85■■□□□ 1.25
PNKP-220ENST00000627232 CCDC134Q9H6E4 229 aa22.85■■□□□ 1.25
PNKP-220ENST00000627232 WDR6Q9NNW5 1121 aaKnown RBP22.85■■□□□ 1.25
PNKP-220ENST00000627232 INTS9Q9NV88 658 aaKnown RBP22.85■■□□□ 1.25
PNKP-220ENST00000627232 ETNK2Q9NVF9 386 aa22.85■■□□□ 1.25
PNKP-220ENST00000627232 RSPH14Q9UHP6 348 aa22.85■■□□□ 1.25
PNKP-220ENST00000627232 CLUHO75153 1309 aa22.85■■□□□ 1.25
PNKP-220ENST00000627232 EBAG9O00559 213 aa22.84■■□□□ 1.25
PNKP-220ENST00000627232 ATP2A2P16615 1042 aaKnown RBP22.84■■□□□ 1.25
PNKP-220ENST00000627232 BDNFP23560 247 aa22.84■■□□□ 1.25
PNKP-220ENST00000627232 GCAP28676 217 aa22.84■■□□□ 1.25
PNKP-220ENST00000627232 HCAR3P49019 387 aa22.84■■□□□ 1.25
PNKP-220ENST00000627232 ZNF135P52742 658 aaPredicted RBP22.84■■□□□ 1.25
PNKP-220ENST00000627232 BBS9Q3SYG4 887 aa22.84■■□□□ 1.25
PNKP-220ENST00000627232 CLLU1OSQ5K130 101 aa22.84■■□□□ 1.25
PNKP-220ENST00000627232 HP1BP3Q5SSJ5 553 aaPredicted RBP22.84■■□□□ 1.25
PNKP-220ENST00000627232 ANKMY2Q8IV38 441 aa22.84■■□□□ 1.25
PNKP-220ENST00000627232 CYP4X1Q8N118 509 aa22.84■■□□□ 1.25
PNKP-220ENST00000627232 TAB3Q8N5C8 712 aaPredicted RBP22.84■■□□□ 1.25
PNKP-220ENST00000627232 FBXO36Q8NEA4 188 aa22.84■■□□□ 1.25
PNKP-220ENST00000627232 OR10T2Q8NGX3 314 aa22.84■■□□□ 1.25
PNKP-220ENST00000627232 HASPINQ8TF76 798 aa22.84■■□□□ 1.25
PNKP-220ENST00000627232 TMLHEQ9NVH6 421 aa22.84■■□□□ 1.25
PNKP-220ENST00000627232 FBXW11Q9UKB1 542 aa22.84■■□□□ 1.25
PNKP-220ENST00000627232 ZNF638Q14966 1978 aaKnown RBP22.84■■□□□ 1.25
PNKP-220ENST00000627232 FKTNO75072 461 aa22.83■■□□□ 1.25
PNKP-220ENST00000627232 BANF1O75531 89 aa22.83■■□□□ 1.25
PNKP-220ENST00000627232 ITGB1P05556 798 aa22.83■■□□□ 1.25
PNKP-220ENST00000627232 NCAM1P13591 858 aa22.83■■□□□ 1.25
PNKP-220ENST00000627232 YY1P25490 414 aa22.83■■□□□ 1.25
PNKP-220ENST00000627232 GRK4P32298 578 aa22.83■■□□□ 1.25
PNKP-220ENST00000627232 APLP1P51693 650 aa22.83■■□□□ 1.25
PNKP-220ENST00000627232 RABGGTBP53611 331 aa22.83■■□□□ 1.25
PNKP-220ENST00000627232 DPYSQ14117 519 aa22.83■■□□□ 1.25
PNKP-220ENST00000627232 PAFAH1B3Q15102 231 aaKnown RBP22.83■■□□□ 1.25
PNKP-220ENST00000627232 VSTM1Q6UX27 236 aa22.83■■□□□ 1.25
PNKP-220ENST00000627232 C4orf50Q6ZRC1 276 aa22.83■■□□□ 1.25
PNKP-220ENST00000627232 SPATS2Q86XZ4 545 aaKnown RBP22.83■■□□□ 1.25
PNKP-220ENST00000627232 PALM2Q8IXS6 379 aa22.83■■□□□ 1.25
PNKP-220ENST00000627232 MCUQ8NE86 351 aa22.83■■□□□ 1.25
PNKP-220ENST00000627232 TFB1MQ8WVM0 346 aaKnown RBP22.83■■□□□ 1.25
PNKP-220ENST00000627232 RHOBTB2Q9BYZ6 727 aa22.83■■□□□ 1.25
PNKP-220ENST00000627232 RABEP2Q9H5N1 569 aa22.83■■□□□ 1.25
PNKP-220ENST00000627232 RABGEF1Q9UJ41 708 aa22.83■■□□□ 1.25
PNKP-220ENST00000627232 RAD54BQ9Y620 910 aa22.83■■□□□ 1.25
PNKP-220ENST00000627232 SYNJ2BP-COX16A0A087WUM0 186 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 KBTBD13C9JR72 458 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 EEF2KO00418 725 aaKnown RBP22.82■■□□□ 1.24
PNKP-220ENST00000627232 SPAG6O75602 509 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 SELPP16109 830 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 YWHAHQ04917 246 aaPredicted RBP22.82■■□□□ 1.24
PNKP-220ENST00000627232 SEMA3BQ13214 749 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 KLHL38Q2WGJ6 581 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 ARL13BQ3SXY8 428 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 HEATR6Q6AI08 1181 aaKnown RBP22.82■■□□□ 1.24
PNKP-220ENST00000627232 LRRC8DQ7L1W4 858 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 LRRTM3Q86VH5 581 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 COLGALT2Q8IYK4 626 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 WDR83Q9BRX9 315 aaKnown RBP22.82■■□□□ 1.24
PNKP-220ENST00000627232 ZMYND15Q9H091 742 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 ACSS3Q9H6R3 686 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 ELAC1Q9H777 363 aaKnown RBP22.82■■□□□ 1.24
PNKP-220ENST00000627232 COX16Q9P0S2 106 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 SENP1Q9P0U3 644 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 DDHD2O94830 711 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 MAP3K6O95382 1288 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 TPSB2P20231 275 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 CXCR3P49682 368 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 GEMIN4P57678 1058 aaKnown RBP22.82■■□□□ 1.24
PNKP-220ENST00000627232 TMED2Q15363 201 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 TPSAB1Q15661 275 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 RFX8Q6ZV50 586 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 ZNF280BQ86YH2 543 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 SPATA2LQ8IUW3 424 aaPredicted RBP22.82■■□□□ 1.24
PNKP-220ENST00000627232 VPS52Q8N1B4 723 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 TMEM209Q96SK2 561 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 FERMT1Q9BQL6 677 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 ETNK1Q9HBU6 452 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 TMEM161AQ9NX61 479 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 TBK1Q9UHD2 729 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 TEX264Q9Y6I9 313 aa22.82■■□□□ 1.24
PNKP-220ENST00000627232 TMEM120BA0PK00 339 aa22.81■■□□□ 1.24
PNKP-220ENST00000627232 POC1B-GALNT4F8VUJ3 575 aa22.81■■□□□ 1.24
PNKP-220ENST00000627232 DCLK1O15075 740 aa22.81■■□□□ 1.24
PNKP-220ENST00000627232 MFSD11O43934 449 aa22.81■■□□□ 1.24
PNKP-220ENST00000627232 BRAFP15056 766 aa22.81■■□□□ 1.24
PNKP-220ENST00000627232 CDK7P50613 346 aa22.81■■□□□ 1.24
PNKP-220ENST00000627232 BFSP2Q13515 415 aa22.81■■□□□ 1.24
PNKP-220ENST00000627232 PDK1Q15118 436 aa22.81■■□□□ 1.24
PNKP-220ENST00000627232 PRKD1Q15139 912 aaPredicted RBP22.81■■□□□ 1.24
PNKP-220ENST00000627232 C3orf62Q6ZUJ4 267 aa22.81■■□□□ 1.24
PNKP-220ENST00000627232 PDZD4Q76G19 769 aaPredicted RBP22.81■■□□□ 1.24
PNKP-220ENST00000627232 CCDC110Q8TBZ0 833 aa22.81■■□□□ 1.24
PNKP-220ENST00000627232 HTR3CQ8WXA8 447 aa22.81■■□□□ 1.24
PNKP-220ENST00000627232 CHMP6Q96FZ7 201 aa22.81■■□□□ 1.24
PNKP-220ENST00000627232 TBC1D13Q9NVG8 400 aa22.81■■□□□ 1.24
PNKP-220ENST00000627232 DDIT4Q9NX09 232 aa22.81■■□□□ 1.24
PNKP-220ENST00000627232 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.81■■□□□ 1.241e-7■■■□□ 14.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms