RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 CBLBQ13191 982 aa11.17□□□□□ -0.62
UPF3A-212ENST00000619079 LLGL2Q6P1M3 1020 aa11.17□□□□□ -0.62
UPF3A-212ENST00000619079 DENND5BQ6ZUT9 1274 aa11.17□□□□□ -0.62
UPF3A-212ENST00000619079 HAUS6Q7Z4H7 955 aa11.17□□□□□ -0.62
UPF3A-212ENST00000619079 TICAM1Q8IUC6 712 aa11.17□□□□□ -0.62
UPF3A-212ENST00000619079 CBWD2Q8IUF1 395 aa11.17□□□□□ -0.62
UPF3A-212ENST00000619079 SHKBP1Q8TBC3 707 aa11.17□□□□□ -0.62
UPF3A-212ENST00000619079 ACER1Q8TDN7 264 aa11.17□□□□□ -0.62
UPF3A-212ENST00000619079 GIPC3Q8TF64 312 aa11.17□□□□□ -0.62
UPF3A-212ENST00000619079 DLG3Q92796 817 aa11.17□□□□□ -0.62
UPF3A-212ENST00000619079 INO80BQ9C086 356 aaPredicted RBP11.17□□□□□ -0.62
UPF3A-212ENST00000619079 TUBA8Q9NY65 449 aaPredicted RBP11.17□□□□□ -0.62
UPF3A-212ENST00000619079 SPATA7Q9P0W8 599 aa11.17□□□□□ -0.62
UPF3A-212ENST00000619079 IGSF9Q9P2J2 1179 aa11.17□□□□□ -0.62
UPF3A-212ENST00000619079 GNEQ9Y223 722 aaKnown RBP11.17□□□□□ -0.62
UPF3A-212ENST00000619079 IVNS1ABPQ9Y6Y0 642 aa11.17□□□□□ -0.62
UPF3A-212ENST00000619079 ZNF701M0R085 212 aaPredicted RBP11.16□□□□□ -0.62
UPF3A-212ENST00000619079 TRDMT1O14717 391 aaKnown RBP11.16□□□□□ -0.62
UPF3A-212ENST00000619079 PSMC3P17980 439 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 DSG3P32926 999 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 GJA5P36382 358 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 ALDH3B2P48448 385 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 HMGCS2P54868 508 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 TUBA4AP68366 448 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 TAP1Q03518 808 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 NOGQ13253 232 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 PIGHQ14442 188 aaPredicted RBP11.16□□□□□ -0.62
UPF3A-212ENST00000619079 C16orf72Q14CZ0 275 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 ATP13A4Q4VNC1 1196 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 C2CD6Q53TS8 623 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 STXBP5Q5T5C0 1151 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 CTAGE3PQ8IX95 158 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 ABRAQ8N0Z2 381 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 PPP4R1Q8TF05 950 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 CCDC97Q96F63 343 aaPredicted RBP11.16□□□□□ -0.62
UPF3A-212ENST00000619079 TRIM56Q9BRZ2 755 aaKnown RBP11.16□□□□□ -0.62
UPF3A-212ENST00000619079 APOL6Q9BWW8 343 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 VPS45Q9NRW7 570 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 AGTPBP1Q9UPW5 1226 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 AFG3L2Q9Y4W6 797 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 TEX264Q9Y6I9 313 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 CCDC162PA2VCL2 907 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 HTR3EA5X5Y0 456 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 GOLGA8IPA6NC78 632 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 TMEM191CA6NGB0 347 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 GOLGA8JA6NMD2 632 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 FBXO21O94952 628 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 ALDH2P05091 517 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 TMEM191BP0C7N4 346 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 RBP3P10745 1247 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 THRAP10827 490 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 ALOX15P16050 662 aaPredicted RBP11.16□□□□□ -0.62
UPF3A-212ENST00000619079 STAT2P52630 851 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 GTF2A2P52657 109 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 PSMC5P62195 406 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 BASP1P80723 227 aaKnown RBP11.16□□□□□ -0.62
UPF3A-212ENST00000619079 OTUD4Q01804 1114 aaKnown RBP11.16□□□□□ -0.62
UPF3A-212ENST00000619079 WDR44Q5JSH3 913 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 SLFN13Q68D06 897 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 GADL1Q6ZQY3 521 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 SV2AQ7L0J3 742 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 POLNQ7Z5Q5 900 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 PPM1NQ8N819 430 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 ACTL9Q8TC94 416 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 NLRP7Q8WX94 980 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 BORCS5Q969J3 196 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 SGF29Q96ES7 293 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 RTKNQ9BST9 563 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 EHMT1Q9H9B1 1298 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 IFT122Q9HBG6 1241 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 HOMER2Q9NSB8 354 aa11.16□□□□□ -0.62
UPF3A-212ENST00000619079 OTOFQ9HC10 1997 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.15□□□□□ -0.62
UPF3A-212ENST00000619079 CCL15-CCL14A0A0B4J2E2 113 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 AOC2O75106 756 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 RFPL1O75677 317 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 P4HBP07237 508 aaKnown RBP11.15□□□□□ -0.62
UPF3A-212ENST00000619079 HMOX2P30519 316 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 HALP42357 657 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 VEGFBP49765 207 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 BACE1P56817 501 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 DGKZQ13574 1117 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 CCL15Q16663 113 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 CES4AQ5XG92 561 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 PDPK2PQ6A1A2 396 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 AMIGO2Q86SJ2 522 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 MFSD14AQ96MC6 490 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 WDR18Q9BV38 432 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 TEKT3Q9BXF9 490 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 SLC2A11Q9BYW1 496 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 SLC13A1Q9BZW2 595 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 ZNF395Q9H8N7 513 aaPredicted RBP11.15□□□□□ -0.62
UPF3A-212ENST00000619079 WRAP73Q9P2S5 460 aaPredicted RBP11.15□□□□□ -0.62
UPF3A-212ENST00000619079 RIMS3Q9UJD0 308 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 DNAJC16Q9Y2G8 782 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 DOCK1Q14185 1865 aa11.15□□□□□ -0.62
UPF3A-212ENST00000619079 CXCL11O14625 94 aa11.15□□□□□ -0.63
UPF3A-212ENST00000619079 ADCY6O43306 1168 aa11.15□□□□□ -0.63
UPF3A-212ENST00000619079 CLASP2O75122 1294 aaKnown RBP11.15□□□□□ -0.63
UPF3A-212ENST00000619079 TRPA1O75762 1119 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms