RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 KLK7P49862 253 aa16.7■□□□□ 0.26
BRCA1-228ENST00000618469 MESP2Q0VG99 397 aa16.7■□□□□ 0.26
BRCA1-228ENST00000618469 KLHL40Q2TBA0 621 aa16.7■□□□□ 0.26
BRCA1-228ENST00000618469 DENND1CQ8IV53 801 aa16.7■□□□□ 0.26
BRCA1-228ENST00000618469 ETFBKMTQ8IXQ9 262 aa16.7■□□□□ 0.26
BRCA1-228ENST00000618469 FAM71AQ8IYT1 594 aa16.7■□□□□ 0.26
BRCA1-228ENST00000618469 C1orf131Q8NDD1 294 aaKnown RBP16.7■□□□□ 0.26
BRCA1-228ENST00000618469 STK32AQ8WU08 396 aa16.7■□□□□ 0.26
BRCA1-228ENST00000618469 BHMTQ93088 406 aa16.7■□□□□ 0.26
BRCA1-228ENST00000618469 DCLK3Q9C098 648 aa16.7■□□□□ 0.26
BRCA1-228ENST00000618469 GANQ9H2C0 597 aa16.7■□□□□ 0.26
BRCA1-228ENST00000618469 ARRDC1-AS1Q9H2J1 176 aa16.7■□□□□ 0.26
BRCA1-228ENST00000618469 FAM207AQ9NSI2 230 aaPredicted RBP16.7■□□□□ 0.26
BRCA1-228ENST00000618469 LIMA1Q9UHB6 759 aaKnown RBP16.7■□□□□ 0.26
BRCA1-228ENST00000618469 ZNF510Q9Y2H8 683 aa16.7■□□□□ 0.26
BRCA1-228ENST00000618469 FRYQ5TBA9 3013 aa16.7■□□□□ 0.26
BRCA1-228ENST00000618469 BAHCC1Q9P281 2608 aa16.7■□□□□ 0.26
BRCA1-228ENST00000618469 LGALS16A8MUM7 142 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 F8VZ95 297 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 K7ESF4 209 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 ATG13O75143 517 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 TULP3O75386 442 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 KAT7O95251 611 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 TYRP14679 529 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 ZNF18P17022 549 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 CDK11BP21127 795 aaKnown RBP16.69■□□□□ 0.26
BRCA1-228ENST00000618469 PXNP49023 591 aaPredicted RBP16.69■□□□□ 0.26
BRCA1-228ENST00000618469 RPL34P49207 117 aaKnown RBP16.69■□□□□ 0.26
BRCA1-228ENST00000618469 SMYD5Q6GMV2 418 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 MSANTD2Q6P1R3 559 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 SFTPA1Q8IWL2 248 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 SCUBE3Q8IX30 993 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 ACDQ96AP0 544 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 NAA15Q9BXJ9 866 aaKnown RBP16.69■□□□□ 0.26
BRCA1-228ENST00000618469 SLC4A5Q9BY07 1137 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 HSD3B7Q9H2F3 369 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 PLCB1Q9NQ66 1216 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 DNAJC17Q9NVM6 304 aaKnown RBP16.69■□□□□ 0.26
BRCA1-228ENST00000618469 POLR3BQ9NW08 1133 aaPredicted RBP16.69■□□□□ 0.26
BRCA1-228ENST00000618469 MARK1Q9P0L2 795 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 TJP2Q9UDY2 1190 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 PCDHGC3Q9UN70 934 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 HBS1LQ9Y450 684 aaKnown RBP16.69■□□□□ 0.26
BRCA1-228ENST00000618469 CEP83Q9Y592 693 aa16.69■□□□□ 0.26
BRCA1-228ENST00000618469 K7EQS6 105 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 PAPSS1O43252 624 aaPredicted RBP16.68■□□□□ 0.26
BRCA1-228ENST00000618469 CACNG3O60359 315 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 LRP3O75074 770 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 NCAM1P13591 858 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 ATP1A3P13637 1013 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 PMLP29590 882 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 KRT9P35527 623 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 BPIFB4P59827 614 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 TRIP4Q15650 581 aaPredicted RBP16.68■□□□□ 0.26
BRCA1-228ENST00000618469 C2orf27AQ580R0 203 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 GRAMD4Q6IC98 578 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 PHTF2Q8N3S3 785 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 CCDC26Q8TAB7 109 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 PCMTD1Q96MG8 357 aaPredicted RBP16.68■□□□□ 0.26
BRCA1-228ENST00000618469 NOX5Q96PH1 765 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 XPO6Q96QU8 1125 aaKnown RBP16.68■□□□□ 0.26
BRCA1-228ENST00000618469 CPXM1Q96SM3 734 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 BPIFA3Q9BQP9 254 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 PLK2Q9NYY3 685 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 WDR35Q9P2L0 1181 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 DEC1Q9P2X7 70 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 AGO1Q9UL18 857 aaKnown RBP16.68■□□□□ 0.26
BRCA1-228ENST00000618469 SLC8A2Q9UPR5 921 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 SPAG17Q6Q759 2223 aa16.68■□□□□ 0.26
BRCA1-228ENST00000618469 SYCE3A1L190 88 aa16.67■□□□□ 0.26
BRCA1-228ENST00000618469 ANTXRLA6NF34 631 aa16.67■□□□□ 0.26
BRCA1-228ENST00000618469 TRIM24O15164 1050 aa16.67■□□□□ 0.26
BRCA1-228ENST00000618469 EPHB6O15197 1021 aa16.67■□□□□ 0.26
BRCA1-228ENST00000618469 CYP11B1P15538 503 aa16.67■□□□□ 0.26
BRCA1-228ENST00000618469 CHKAP35790 457 aa16.67■□□□□ 0.26
BRCA1-228ENST00000618469 GRIA2P42262 883 aa16.67■□□□□ 0.26
BRCA1-228ENST00000618469 HARS2P49590 506 aaKnown RBP16.67■□□□□ 0.26
BRCA1-228ENST00000618469 POLR2FP61218 127 aaKnown RBP16.67■□□□□ 0.26
BRCA1-228ENST00000618469 SYCP1Q15431 976 aa16.67■□□□□ 0.26
BRCA1-228ENST00000618469 TAF3Q5VWG9 929 aa16.67■□□□□ 0.26
BRCA1-228ENST00000618469 TMEM110Q86TL2 294 aa16.67■□□□□ 0.26
BRCA1-228ENST00000618469 LONP2Q86WA8 852 aa16.67■□□□□ 0.26
BRCA1-228ENST00000618469 DHX40Q8IX18 779 aaKnown RBP16.67■□□□□ 0.26
BRCA1-228ENST00000618469 TERB1Q8NA31 727 aa16.67■□□□□ 0.26
BRCA1-228ENST00000618469 DQX1Q8TE96 717 aaKnown RBP16.67■□□□□ 0.26
BRCA1-228ENST00000618469 IPO4Q8TEX9 1081 aaKnown RBP16.67■□□□□ 0.26
BRCA1-228ENST00000618469 USP33Q8TEY7 942 aa16.67■□□□□ 0.26
BRCA1-228ENST00000618469 PIWIL1Q96J94 861 aaKnown RBP16.67■□□□□ 0.26
BRCA1-228ENST00000618469 HHIPQ96QV1 700 aa16.67■□□□□ 0.26
BRCA1-228ENST00000618469 TRIM62Q9BVG3 475 aa16.67■□□□□ 0.26
BRCA1-228ENST00000618469 STK33Q9BYT3 514 aa16.67■□□□□ 0.26
BRCA1-228ENST00000618469 PDCL3Q9H2J4 239 aa16.67■□□□□ 0.26
BRCA1-228ENST00000618469 SIK3Q9Y2K2 1263 aa16.67■□□□□ 0.26
BRCA1-228ENST00000618469 CAPN9O14815 690 aa16.66■□□□□ 0.26
BRCA1-228ENST00000618469 FYNP06241 537 aa16.66■□□□□ 0.26
BRCA1-228ENST00000618469 PTMSP20962 102 aa16.66■□□□□ 0.26
BRCA1-228ENST00000618469 UBXN1Q04323 297 aa16.66■□□□□ 0.26
BRCA1-228ENST00000618469 DMC1Q14565 340 aa16.66■□□□□ 0.26
BRCA1-228ENST00000618469 PREPLQ4J6C6 727 aaPredicted RBP16.66■□□□□ 0.26
BRCA1-228ENST00000618469 C10orf76Q5T2E6 689 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms