RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 LRRC4Q9HBW1 653 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 PAPPA2Q9BXP8 1791 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 KPNA7A9QM74 516 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 GYG2O15488 501 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 BEST1O76090 585 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 TMEM63AO94886 807 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 KRT4P19013 534 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 ROR1Q01973 937 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 FSCN1Q16658 493 aaKnown RBP14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 CCDC14Q49A88 953 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 SCN4BQ8IWT1 228 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 HACE1Q8IYU2 909 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 FAM81AQ8TBF8 368 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 GRAMD1AQ96CP6 724 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 CADM1Q9BY67 442 aaKnown RBP14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 DNAI2Q9GZS0 605 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 GRID1Q9ULK0 1009 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 CDH16O75309 829 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 TBX10O75333 385 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 KLRC2P26717 231 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 ELK3P41970 407 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 THOC5Q13769 683 aaKnown RBP14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 SPARCL1Q14515 664 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 SNX17Q15036 470 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 WASHC2DQ5SRD0 308 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 CST9Q5W186 159 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 C4orf50Q6ZRC1 276 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 TRIM74Q86UV6 250 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 TRIM73Q86UV7 250 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 IGDCC3Q8IVU1 814 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 PDIK1LQ8N165 341 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 UBR7Q8N806 425 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 APPL2Q8NEU8 664 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 PRR11Q96HE9 360 aaPredicted RBP14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 SNRNP25Q9BV90 132 aaKnown RBP14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 CNTN6Q9UQ52 1028 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 C17orf102A2RUQ5 167 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 MAP3K7O43318 606 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 USP12O75317 370 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 MAP2K5Q13163 448 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 BMPR2Q13873 1038 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 SLC1A5Q15758 541 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 CFAP157Q5JU67 520 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 WDR60Q8WVS4 1066 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 CPT1BQ92523 772 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 ANKRD27Q96NW4 1050 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 LGMNQ99538 433 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 ZNF518BQ9C0D4 1074 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 SIK2Q9H0K1 926 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 ETNK2Q9NVF9 386 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 ARL8BQ9NVJ2 186 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 DDX56Q9NY93 547 aaKnown RBP14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 SNX10Q9Y5X0 201 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 NUMBLQ9Y6R0 609 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 AOC2O75106 756 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 PTPN4P29074 926 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 SESN2P58004 480 aaPredicted RBP14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 AP1B1Q10567 949 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 CRHR2Q13324 411 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 ZRSR2Q15696 482 aaKnown RBP14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 C12orf50Q8NA57 414 aaPredicted RBP14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 NDNQ99608 321 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 TTC1Q99614 292 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 BCO2Q9BYV7 579 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 RHBDL2Q9NX52 303 aa14.97□□□□□ -0.01
SHROOM1-208ENST00000617339 SCN1AP35498 2009 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 MANSC4A6NHS7 340 aaPredicted RBP14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 E7ENQ6 273 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 KCNK1O00180 336 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 LMNB2Q03252 620 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 FAM110CQ1W6H9 321 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 RHBDF2Q6PJF5 856 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 UNC5BQ8IZJ1 945 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 INPP5DQ92835 1189 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 APOL2Q9BQE5 337 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 CNPY3Q9BT09 278 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 PCDHGC3Q9UN70 934 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 ABCG1P45844 678 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 PSEN2P49810 448 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 C9orf57Q5W0N0 161 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 OTOAQ7RTW8 1153 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 CCDC185Q8N715 623 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 ENDOVQ8N8Q3 282 aaKnown RBP14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 RFWD2Q8NHY2 731 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 FAM136AQ96C01 138 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 SMC6Q96SB8 1091 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 FBXO6Q9NRD1 293 aaPredicted RBP14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 SLC17A6Q9P2U8 582 aa14.96□□□□□ -0.01
SHROOM1-208ENST00000617339 CCDC195A0A1B0GUA6 201 aa14.96□□□□□ -0.02
SHROOM1-208ENST00000617339 CYB561D2O14569 222 aa14.96□□□□□ -0.02
SHROOM1-208ENST00000617339 DARSP14868 501 aaKnown RBP14.96□□□□□ -0.02
SHROOM1-208ENST00000617339 GOT1P17174 413 aa14.96□□□□□ -0.02
SHROOM1-208ENST00000617339 TCEAL1Q15170 157 aa14.96□□□□□ -0.02
SHROOM1-208ENST00000617339 TAF12Q16514 161 aa14.96□□□□□ -0.02
SHROOM1-208ENST00000617339 KBTBD2Q8IY47 623 aa14.96□□□□□ -0.02
SHROOM1-208ENST00000617339 DEFB106AQ8N104 65 aa14.96□□□□□ -0.02
SHROOM1-208ENST00000617339 TTC17Q96AE7 1141 aa14.96□□□□□ -0.02
SHROOM1-208ENST00000617339 UBP1Q9NZI7 540 aa14.96□□□□□ -0.02
SHROOM1-208ENST00000617339 F8W810 466 aa14.95□□□□□ -0.02
SHROOM1-208ENST00000617339 PFKMP08237 780 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms