RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 SPDYCQ5MJ68 293 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 WASHC2DQ5SRD0 308 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 DEFB106AQ8N104 65 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 CERS5Q8N5B7 392 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 SYT15Q9BQS2 421 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 ZFYVE28Q9HCC9 887 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 SFMBT1Q9UHJ3 866 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 DRG1Q9Y295 367 aaKnown RBP14.39□□□□□ -0.11
CPSF1-212ENST00000616140 CASTOR2A6NHX0 329 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 F5H5T6 163 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 GOLGA8TH3BQL2 631 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 UBDO15205 165 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 HMGCRP04035 888 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 PAEPP09466 180 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 TNFRSF8P28908 595 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 S100A5P33763 92 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 RPA3P35244 121 aaPredicted RBP14.39□□□□□ -0.11
CPSF1-212ENST00000616140 CDH17Q12864 832 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 NFYCQ13952 458 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 TCHHL1Q5QJ38 904 aaPredicted RBP14.39□□□□□ -0.11
CPSF1-212ENST00000616140 HORMAD1Q86X24 394 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 TMEM161BQ8NDZ6 487 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 SLC2A14Q8TDB8 520 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 CYP3A7-CYP3A51PA0A087WV96 503 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 TGFB1I1O43294 461 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 DDHD2O94830 711 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 VAPBO95292 243 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 CYP3A7P24462 503 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 CCR1P32246 355 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 MLH1P40692 756 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 LHX1P48742 406 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 DRG2P55039 364 aaKnown RBP14.38□□□□□ -0.11
CPSF1-212ENST00000616140 MAMLD1Q13495 774 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 TNFRSF25Q93038 417 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 HES6Q96HZ4 224 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 KLHL4Q9C0H6 718 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 GPRC5DQ9NZD1 345 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 LRCH1Q9Y2L9 728 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 GPR182O15218 404 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 HNRNPRO43390 633 aaKnown RBP14.38□□□□□ -0.11
CPSF1-212ENST00000616140 USP1O94782 785 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 BAIAP3O94812 1187 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 SPATA31C1P0DKV0 1188 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 KDELR1P24390 212 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 FMO1Q01740 532 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 SLC34A1Q06495 639 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 PRKAA1Q13131 559 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 OASLQ15646 514 aaKnown RBP14.38□□□□□ -0.11
CPSF1-212ENST00000616140 DUPD1Q68J44 220 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 SLC9A9Q8IVB4 645 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 DIS3LQ8TF46 1054 aaKnown RBP14.38□□□□□ -0.11
CPSF1-212ENST00000616140 CATSPER2Q96P56 530 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 SLC12A8A0AV02 714 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 RGL2O15211 777 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 TSPAN3O60637 253 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 PDE5AO76074 875 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 ITGB5P18084 799 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 CD151P48509 253 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 CACNA2D1P54289 1103 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 C15orf59Q2T9L4 293 aaPredicted RBP14.38□□□□□ -0.11
CPSF1-212ENST00000616140 C16orf46Q6P387 395 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 PLEKHH3Q7Z736 793 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 IQCKQ8N0W5 287 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 MSL3Q8N5Y2 521 aaKnown RBP14.38□□□□□ -0.11
CPSF1-212ENST00000616140 PWWP2AQ96N64 755 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 IKZF4Q9H2S9 585 aa14.38□□□□□ -0.11
CPSF1-212ENST00000616140 ASS1P00966 412 aaKnown RBP14.37□□□□□ -0.11
CPSF1-212ENST00000616140 DDX5P17844 614 aaKnown RBP14.37□□□□□ -0.11
CPSF1-212ENST00000616140 MMRN1Q13201 1228 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 MARC1Q5VT66 337 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 KIAA2013Q8IYS2 634 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 C4orf32Q8N8J7 132 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 PORCNQ9H237 461 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 MEI4A8MW99 385 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 UBE3AQ05086 875 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 ECM1Q16610 540 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 TRIM60Q495X7 471 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 UGT3A1Q6NUS8 523 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 TFAP2DQ7Z6R9 452 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 KCNMB4Q86W47 210 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 RAB42Q8N4Z0 105 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 SNRNP27Q8WVK2 155 aaKnown RBP14.37□□□□□ -0.11
CPSF1-212ENST00000616140 NMD3Q96D46 503 aaKnown RBP14.37□□□□□ -0.11
CPSF1-212ENST00000616140 FAM84AQ96KN4 292 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 P2RX7Q99572 595 aaKnown RBP14.37□□□□□ -0.11
CPSF1-212ENST00000616140 SYTL2Q9HCH5 934 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 EIF3LQ9Y262 564 aaKnown RBP14.37□□□□□ -0.11
CPSF1-212ENST00000616140 ELF3P78545 371 aaPredicted RBP14.37□□□□□ -0.11
CPSF1-212ENST00000616140 RUNX1T1Q06455 604 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 DDI1Q8WTU0 396 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 STK32AQ8WU08 396 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 NMRK2Q9NPI5 230 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 PCDHAC2Q9Y5I4 1007 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 MAGEB16A2A368 324 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 CELF2O95319 508 aaKnown RBP14.37□□□□□ -0.11
CPSF1-212ENST00000616140 ABCG1P45844 678 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 RPL7AP62424 266 aaKnown RBP14.37□□□□□ -0.11
CPSF1-212ENST00000616140 SLC6A3Q01959 620 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 ACAP1Q15027 740 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 GRIK4Q16099 956 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms