RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 PHKA2P46019 1235 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 PDK3Q15120 406 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 LIN52Q52LA3 116 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 PPM1JQ5JR12 505 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 PDZD4Q76G19 769 aaPredicted RBP12.98□□□□□ -0.33
LIG1-221ENST00000613670 SNX32Q86XE0 403 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 COLGALT1Q8NBJ5 622 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 USP33Q8TEY7 942 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 COPS7BQ9H9Q2 264 aaPredicted RBP12.98□□□□□ -0.33
LIG1-221ENST00000613670 ZNF536O15090 1300 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 PAPPAQ13219 1627 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 ARHGAP10A1A4S6 786 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 TBC1D12O60347 775 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 CRCPO75575 148 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 NPM3O75607 178 aaKnown RBP12.98□□□□□ -0.33
LIG1-221ENST00000613670 MT-CO1P00395 513 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 SERPINA6P08185 405 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 NFICP08651 508 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 F7P08709 466 aaPredicted RBP12.98□□□□□ -0.33
LIG1-221ENST00000613670 SLC18A1P54219 525 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 TMEM62Q0P6H9 643 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 KCTD2Q14681 263 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 USP10Q14694 798 aaKnown RBP12.98□□□□□ -0.33
LIG1-221ENST00000613670 LY6KQ17RY6 165 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 DCAF6Q58WW2 860 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 STRA8Q7Z7C7 330 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 C10orf107Q8IVU9 208 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 ZSCAN18Q8TBC5 510 aaPredicted RBP12.98□□□□□ -0.33
LIG1-221ENST00000613670 TFB1MQ8WVM0 346 aaKnown RBP12.98□□□□□ -0.33
LIG1-221ENST00000613670 NRG4Q8WWG1 115 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 MARK4Q96L34 752 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 PANX3Q96QZ0 392 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 UBP1Q9NZI7 540 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 STAG3L1P0CL83 205 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 VDRP11473 427 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 SPRP35270 261 aaPredicted RBP12.98□□□□□ -0.33
LIG1-221ENST00000613670 GRIA1P42261 906 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 NOMO1Q15155 1222 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 GSTA3Q16772 222 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 ANGEL2Q5VTE6 544 aaKnown RBP12.98□□□□□ -0.33
LIG1-221ENST00000613670 POTEAQ6S8J7 498 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 CHSY1Q86X52 802 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 SIX6OS1Q8N1H7 587 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 NR1H4Q96RI1 486 aaPredicted RBP12.98□□□□□ -0.33
LIG1-221ENST00000613670 SNRNP25Q9BV90 132 aaKnown RBP12.98□□□□□ -0.33
LIG1-221ENST00000613670 SSU72Q9NP77 194 aaKnown RBP12.98□□□□□ -0.33
LIG1-221ENST00000613670 BTBD7Q9P203 1132 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 THEGQ9P2T0 379 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 DCDC2Q9UHG0 476 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 SYNPO2Q9UMS6 1093 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 AP4E1Q9UPM8 1137 aa12.98□□□□□ -0.33
LIG1-221ENST00000613670 TPST1O60507 370 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 MAGEC1O60732 1142 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 ZFXP17010 805 aaPredicted RBP12.97□□□□□ -0.33
LIG1-221ENST00000613670 CASP2P42575 452 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 BACE1P56817 501 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 ESRRGP62508 458 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 RBP5P82980 135 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 GBE1Q04446 702 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 ITKQ08881 620 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 ZNF252P-AS1Q0IIN9 211 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 PRPSAP1Q14558 356 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 PDK2Q15119 407 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 FAM183BPQ6ZVS7 135 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 TAS1R3Q7RTX0 852 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 PTAR1Q7Z6K3 402 aaPredicted RBP12.97□□□□□ -0.33
LIG1-221ENST00000613670 CATSPER2Q96P56 530 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 CCT7Q99832 543 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 S100A14Q9HCY8 104 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 SSX2IPQ9Y2D8 614 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 SRGAP2BP0DMP2 458 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 KCNA2P16389 499 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 CCNFP41002 786 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 TMCO4Q5TGY1 634 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 STYK1Q6J9G0 422 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 DPY19L2Q6NUT2 758 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 LRRC43Q8N309 656 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 EBNA1BP2Q99848 306 aaKnown RBP12.97□□□□□ -0.33
LIG1-221ENST00000613670 TCF7L2Q9NQB0 619 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 XPNPEP3Q9NQH7 507 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 MAP3K20Q9NYL2 800 aaKnown RBP12.97□□□□□ -0.33
LIG1-221ENST00000613670 KIAA1551Q9HCM1 1747 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 TRDMT1O14717 391 aaKnown RBP12.97□□□□□ -0.33
LIG1-221ENST00000613670 TPH1P17752 444 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 NELFEP18615 380 aaKnown RBP12.97□□□□□ -0.33
LIG1-221ENST00000613670 SULT1E1P49888 294 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 AQP4P55087 323 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 LRRC8EQ6NSJ5 796 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 RWDD4Q6NW29 188 aaKnown RBP12.97□□□□□ -0.33
LIG1-221ENST00000613670 ZPBP2Q6X784 338 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 PLD5Q8N7P1 536 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 ILKAPQ9H0C8 392 aaPredicted RBP12.97□□□□□ -0.33
LIG1-221ENST00000613670 NRDE2Q9H7Z3 1164 aa12.97□□□□□ -0.33
LIG1-221ENST00000613670 MRPL42Q9Y6G3 142 aaKnown RBP12.97□□□□□ -0.33
LIG1-221ENST00000613670 LACTBL1A8MY62 500 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 SUPT3HO75486 399 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 GRK2P25098 689 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 RAB27AP51159 221 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 ZNF143P52747 638 aaPredicted RBP12.96□□□□□ -0.33
LIG1-221ENST00000613670 ACTR3P61158 418 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms