RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 CCDC186Q7Z3E2 898 aa6.43□□□□□ -1.38
VRK3-220ENST00000600259 KIAA0907Q7Z7F0 614 aaPredicted RBP6.43□□□□□ -1.38
VRK3-220ENST00000600259 FAM217AQ8IXS0 508 aa6.43□□□□□ -1.38
VRK3-220ENST00000600259 ZCCHC9Q8N567 271 aaKnown RBP6.43□□□□□ -1.38
VRK3-220ENST00000600259 TMC2Q8TDI7 906 aa6.43□□□□□ -1.38
VRK3-220ENST00000600259 SORCS1Q8WY21 1168 aa6.43□□□□□ -1.38
VRK3-220ENST00000600259 BHMTQ93088 406 aa6.43□□□□□ -1.38
VRK3-220ENST00000600259 DHX58Q96C10 678 aa6.43□□□□□ -1.38
VRK3-220ENST00000600259 CYFIP2Q96F07 1278 aa6.43□□□□□ -1.38
VRK3-220ENST00000600259 SIPA1Q96FS4 1042 aa6.43□□□□□ -1.38
VRK3-220ENST00000600259 NUP58Q9BVL2 599 aa6.43□□□□□ -1.38
VRK3-220ENST00000600259 BLZF1Q9H2G9 400 aa6.43□□□□□ -1.38
VRK3-220ENST00000600259 KCTD10Q9H3F6 313 aa6.43□□□□□ -1.38
VRK3-220ENST00000600259 APOBEC3GQ9HC16 384 aaKnown RBP6.43□□□□□ -1.38
VRK3-220ENST00000600259 PNPLA8Q9NP80 782 aa6.43□□□□□ -1.38
VRK3-220ENST00000600259 SLC39A2Q9NP94 309 aa6.43□□□□□ -1.38
VRK3-220ENST00000600259 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.43□□□□□ -1.38
VRK3-220ENST00000600259 TM7SF3Q9NS93 570 aa6.43□□□□□ -1.38
VRK3-220ENST00000600259 FAM49BQ9NUQ9 324 aa6.43□□□□□ -1.38
VRK3-220ENST00000600259 ELOVL2Q9NXB9 296 aa6.43□□□□□ -1.38
VRK3-220ENST00000600259 CLIC5Q9NZA1 410 aa6.43□□□□□ -1.38
VRK3-220ENST00000600259 EIF2B4Q9UI10 523 aaKnown RBP6.43□□□□□ -1.38
VRK3-220ENST00000600259 LSM7Q9UK45 103 aaKnown RBP6.43□□□□□ -1.38
VRK3-220ENST00000600259 AGO1Q9UL18 857 aaKnown RBP6.43□□□□□ -1.38
VRK3-220ENST00000600259 GOLGA4Q13439 2230 aaKnown RBP6.43□□□□□ -1.38
VRK3-220ENST00000600259 UBE4BO95155 1302 aa6.43□□□□□ -1.38
VRK3-220ENST00000600259 CEP192Q8TEP8 1941 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 A0A087WV48 116 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 KCNK3O14649 394 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 IKBKBO14920 756 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 SPTLC2O15270 562 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 POLR2DO15514 142 aaKnown RBP6.42□□□□□ -1.38
VRK3-220ENST00000600259 TIMM44O43615 452 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 HLA-DRAP01903 254 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 FAM200BP0CF97 657 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 CD44P16070 742 aaKnown RBP6.42□□□□□ -1.38
VRK3-220ENST00000600259 ADORA2BP29275 332 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 OXTRP30559 389 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 ACSL1P33121 698 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 MATKP42679 507 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 CSNK1EP49674 416 aaKnown RBP6.42□□□□□ -1.38
VRK3-220ENST00000600259 CYP4F3Q08477 520 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 BIRC3Q13489 604 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 CAMK2GQ13555 558 aaPredicted RBP6.42□□□□□ -1.38
VRK3-220ENST00000600259 SMAD1Q15797 465 aaKnown RBP6.42□□□□□ -1.38
VRK3-220ENST00000600259 KIF19Q2TAC6 998 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 C10orf120Q5SQS8 335 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 BHLHA9Q7RTU4 235 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 SCUBE3Q8IX30 993 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 CPXM2Q8N436 756 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 IQUBQ8NA54 791 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 KIAA0895Q8NCT3 520 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 RHBDD1Q8TEB9 315 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 SETD7Q8WTS6 366 aaKnown RBP6.42□□□□□ -1.38
VRK3-220ENST00000600259 TAF4BQ92750 862 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 CRELD1Q96HD1 420 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 INTS4Q96HW7 963 aaKnown RBP6.42□□□□□ -1.38
VRK3-220ENST00000600259 CDC6Q99741 560 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 DUSP16Q9BY84 665 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 BACH2Q9BYV9 841 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 SLC2A11Q9BYW1 496 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 NACA2Q9H009 215 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 MIR1-1HGQ9H1L0 117 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 PCED1AQ9H1Q7 454 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 TMEM245Q9H330 911 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 ZSCAN16Q9H4T2 348 aaPredicted RBP6.42□□□□□ -1.38
VRK3-220ENST00000600259 C6orf106Q9H6K1 298 aaPredicted RBP6.42□□□□□ -1.38
VRK3-220ENST00000600259 OSGEPQ9NPF4 335 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 ZNF510Q9Y2H8 683 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 PCDHA5Q9Y5H7 936 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 SNX11Q9Y5W9 270 aa6.42□□□□□ -1.38
VRK3-220ENST00000600259 NUMA1Q14980 2115 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 MEI4A8MW99 385 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 PDXKO00764 312 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 FLRT2O43155 660 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 PAPSS1O43252 624 aaPredicted RBP6.41□□□□□ -1.38
VRK3-220ENST00000600259 TNFSF14O43557 240 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 PCDHGA12O60330 932 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 TSPAN3O60637 253 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 CUTAO60888 179 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 YEATS4O95619 227 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 CER1O95813 267 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 HLA-EP13747 358 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 CORO1AP31146 461 aaKnown RBP6.41□□□□□ -1.38
VRK3-220ENST00000600259 CHKAP35790 457 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 CTSKP43235 329 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 PSEN1P49768 467 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 COG7P83436 770 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 PPP3CAQ08209 521 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 STARD3Q14849 445 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 EIF4HQ15056 248 aaKnown RBP6.41□□□□□ -1.38
VRK3-220ENST00000600259 STK38Q15208 465 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 TRIP4Q15650 581 aaPredicted RBP6.41□□□□□ -1.38
VRK3-220ENST00000600259 RAB41Q5JT25 222 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 PPP1R26Q5T8A7 1209 aaPredicted RBP6.41□□□□□ -1.38
VRK3-220ENST00000600259 PM20D1Q6GTS8 502 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 IL27RAQ6UWB1 636 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 ZC3H3Q8IXZ2 948 aaKnown RBP6.41□□□□□ -1.38
VRK3-220ENST00000600259 GRAMD1CQ8IYS0 662 aa6.41□□□□□ -1.38
VRK3-220ENST00000600259 OR2T3Q8NH03 318 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms