RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 IQUBQ8NA54 791 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 CEP76Q8TAP6 659 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 SETD7Q8WTS6 366 aaKnown RBP9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 NDRG1Q92597 394 aaKnown RBP9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 CRELD1Q96HD1 420 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 ZNF419Q96HQ0 510 aaPredicted RBP9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 TNIP3Q96KP6 325 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 XPO6Q96QU8 1125 aaKnown RBP9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 VRTNQ9H8Y1 702 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 PRDM16Q9HAZ2 1276 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 CSNK1G1Q9HCP0 422 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 RASAL2Q9UJF2 1139 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 NAGPAQ9UK23 515 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 BTBD3Q9Y2F9 522 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 FNDC3AQ9Y2H6 1198 aaKnown RBP9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 CABIN1Q9Y6J0 2220 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 FBN3Q75N90 2809 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 UBE4BO95155 1302 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 A0A087WV48 116 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 FAM149AA5PLN7 773 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 UPK3BL1B0FP48 263 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 UPK3BL2E5RIL1 263 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 CUTAO60888 179 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 PPP6R2O75170 966 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 ZNF217O75362 1048 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 SYPP08247 313 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 FAM163BP0C2L3 166 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 ATXN1LP0C7T5 689 aaKnown RBP9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 PRKCHP24723 683 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 CD6P30203 668 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 CORO1AP31146 461 aaKnown RBP9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 HOXD12P35452 270 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 MFAP3P55082 362 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 CLDN6P56747 220 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 AMPD3Q01432 767 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 EFEMP1Q12805 493 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 PKP1Q13835 747 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 ZNF423Q2M1K9 1284 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 DCAF12L1Q5VU92 463 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 FYB2Q5VWT5 728 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 TMEM215Q68D42 235 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 C12orf56Q8IXR9 622 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 CRYBG2Q8N1P7 616 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 TAS1R2Q8TE23 839 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 SNX19Q92543 992 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 CYFIP2Q96F07 1278 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 EEF2KMTQ96G04 330 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 CUEDC2Q9H467 287 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 ZSCAN16Q9H4T2 348 aaPredicted RBP9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 GAREM1Q9H706 876 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 CYLDQ9NQC7 956 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 DMAC2Q9NW81 257 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 WSB2Q9NYS7 404 aaPredicted RBP9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 MARK1Q9P0L2 795 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 WDR35Q9P2L0 1181 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 DKK4Q9UBT3 224 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 EIF2B4Q9UI10 523 aaKnown RBP9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 LSM7Q9UK45 103 aaKnown RBP9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 PCDHA7Q9UN72 937 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 SCML2Q9UQR0 700 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 PCDHB9Q9Y5E1 797 aa9.09□□□□□ -0.95
SHKBP1-220ENST00000599716 BOD1L1Q8NFC6 3051 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 SPTBN1Q01082 2364 aaKnown RBP9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 A0A1B0GVT2 93 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 CAPN9O14815 690 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 ZBTB24O43167 697 aaPredicted RBP9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 TSPAN3O60637 253 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 CBFA2T3O75081 653 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 ASS1P00966 412 aaKnown RBP9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 NR3C1P04150 777 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 GCLMP48507 274 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 TPMTP51580 245 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 COPAP53621 1224 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 CLDN10P78369 228 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 IL9RQ01113 521 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 PPP3CAQ08209 521 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 ZNF234Q14588 700 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 ZACNQ401N2 412 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 KMT5BQ4FZB7 885 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 SYCP2LQ5T4T6 812 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 PPP1R26Q5T8A7 1209 aaPredicted RBP9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 CNNM4Q6P4Q7 775 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 NUDT18Q6ZVK8 323 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 TMPRSS6Q8IU80 811 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 DENND1CQ8IV53 801 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 KCNV2Q8TDN2 545 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 ADAMTS14Q8WXS8 1223 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 CIPCQ9C0C6 399 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 LRRC27Q9C0I9 530 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 KCTD10Q9H3F6 313 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 MTG2Q9H4K7 406 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 FBXO44Q9H4M3 255 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 C6orf106Q9H6K1 298 aaPredicted RBP9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 TOR4AQ9NXH8 423 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 DNMT3LQ9UJW3 386 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 PCOLCE2Q9UKZ9 415 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 AGO1Q9UL18 857 aaKnown RBP9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 MAPK8IP1Q9UQF2 711 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 MORC2Q9Y6X9 1032 aaPredicted RBP9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms