RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 CACNA2D4Q7Z3S7 1137 aa14.75□□□□□ -0.05
LIG1-218ENST00000599322 C12orf40Q86WS4 652 aa14.75□□□□□ -0.05
LIG1-218ENST00000599322 ETFBKMTQ8IXQ9 262 aa14.75□□□□□ -0.05
LIG1-218ENST00000599322 ALLCQ8N6M5 410 aa14.75□□□□□ -0.05
LIG1-218ENST00000599322 TXNDC5Q8NBS9 432 aaKnown RBP14.75□□□□□ -0.05
LIG1-218ENST00000599322 TMEM35BQ8NCS4 154 aa14.75□□□□□ -0.05
LIG1-218ENST00000599322 TMA16Q96EY4 203 aaKnown RBP14.75□□□□□ -0.05
LIG1-218ENST00000599322 PPP1R13BQ96KQ4 1090 aa14.75□□□□□ -0.05
LIG1-218ENST00000599322 ZSWIM1Q9BR11 485 aa14.75□□□□□ -0.05
LIG1-218ENST00000599322 SLC4A5Q9BY07 1137 aa14.75□□□□□ -0.05
LIG1-218ENST00000599322 SLC2A11Q9BYW1 496 aa14.75□□□□□ -0.05
LIG1-218ENST00000599322 IRX2Q9BZI1 471 aaPredicted RBP14.75□□□□□ -0.05
LIG1-218ENST00000599322 LHX5Q9H2C1 402 aa14.75□□□□□ -0.05
LIG1-218ENST00000599322 FANCLQ9NW38 375 aa14.75□□□□□ -0.05
LIG1-218ENST00000599322 SMTNL1A8MU46 457 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 FOXN3O00409 490 aaPredicted RBP14.74□□□□□ -0.05
LIG1-218ENST00000599322 FOXD2O60548 495 aaPredicted RBP14.74□□□□□ -0.05
LIG1-218ENST00000599322 GREM1O60565 184 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 APOEP02649 317 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 KLKB1P03952 638 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 GBP1P32455 592 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 YWHAZP63104 245 aaKnown RBP14.74□□□□□ -0.05
LIG1-218ENST00000599322 DRAP1Q14919 205 aaPredicted RBP14.74□□□□□ -0.05
LIG1-218ENST00000599322 ELF2Q15723 593 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 CRY1Q16526 586 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 MIIPQ5JXC2 388 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 ADGRF1Q5T601 910 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 KLHDC7AQ5VTJ3 777 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 TOGARAM2Q6ZUX3 1019 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 BEND5Q7L4P6 421 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 DGLUCYQ7Z3D6 616 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 TMEM110Q86TL2 294 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 CHPFQ8IZ52 775 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 GAB3Q8WWW8 586 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 SPAG5Q96R06 1193 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 STK33Q9BYT3 514 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 POPDC2Q9HBU9 364 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 DLL3Q9NYJ7 618 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 PLK2Q9NYY3 685 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 EBF1Q9UH73 591 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 PCDHGC3Q9UN70 934 aa14.74□□□□□ -0.05
LIG1-218ENST00000599322 BECN2A8MW95 431 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 E5RJQ4 531 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 NPC1O15118 1278 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 IRAK2O43187 625 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 HRO43593 1189 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 TIMM44O43615 452 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 RHOBTB1O94844 696 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 RETP07949 1114 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 GLI1P08151 1106 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 UCHL3P15374 230 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 NTSR1P30989 418 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 TPM4P67936 248 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 CDK17Q00537 523 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 RING1Q06587 406 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 DMWDQ09019 674 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 MTA1Q13330 715 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 PDCLQ13371 301 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 NNTQ13423 1086 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 PUM1Q14671 1186 aaKnown RBP eCLIP14.73□□□□□ -0.05
LIG1-218ENST00000599322 KRT31Q15323 416 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 LPAL2Q16609 132 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 CDKAL1Q5VV42 579 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 OR6B2Q6IFH4 312 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 ANO7Q6IWH7 933 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 BHLHA9Q7RTU4 235 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 PASD1Q8IV76 773 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 FAM71AQ8IYT1 594 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 IL17RCQ8NAC3 791 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 EZH1Q92800 747 aaPredicted RBP14.73□□□□□ -0.05
LIG1-218ENST00000599322 RNF34Q969K3 372 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 SPACA7Q96KW9 195 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 SIX2Q9NPC8 291 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 PLCB1Q9NQ66 1216 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 USP18Q9UMW8 372 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 STARD13Q9Y3M8 1113 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 ATG2BQ96BY7 2078 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 EML5Q05BV3 1969 aa14.73□□□□□ -0.05
LIG1-218ENST00000599322 MAP3K13O43283 966 aa14.72□□□□□ -0.05
LIG1-218ENST00000599322 TSPAN3O60637 253 aa14.72□□□□□ -0.05
LIG1-218ENST00000599322 PENKP01210 267 aaPredicted RBP14.72□□□□□ -0.05
LIG1-218ENST00000599322 SLC2A3P11169 496 aa14.72□□□□□ -0.05
LIG1-218ENST00000599322 SDHBP21912 280 aa14.72□□□□□ -0.05
LIG1-218ENST00000599322 RPL34P49207 117 aaKnown RBP14.72□□□□□ -0.05
LIG1-218ENST00000599322 APBA1Q02410 837 aa14.72□□□□□ -0.05
LIG1-218ENST00000599322 TYRO3Q06418 890 aa14.72□□□□□ -0.05
LIG1-218ENST00000599322 STARD3Q14849 445 aa14.72□□□□□ -0.05
LIG1-218ENST00000599322 SYCP1Q15431 976 aa14.72□□□□□ -0.05
LIG1-218ENST00000599322 RSPO4Q2I0M5 234 aaPredicted RBP14.72□□□□□ -0.05
LIG1-218ENST00000599322 FILIP1LQ4L180 1135 aa14.72□□□□□ -0.05
LIG1-218ENST00000599322 EMC10Q5UCC4 262 aa14.72□□□□□ -0.05
LIG1-218ENST00000599322 C11orf57Q6ZUT1 292 aaPredicted RBP14.72□□□□□ -0.05
LIG1-218ENST00000599322 ANKS1BQ7Z6G8 1248 aa14.72□□□□□ -0.05
LIG1-218ENST00000599322 ZDHHC17Q8IUH5 632 aa14.72□□□□□ -0.05
LIG1-218ENST00000599322 NEK11Q8NG66 645 aa14.72□□□□□ -0.05
LIG1-218ENST00000599322 CLEC4CQ8WTT0 213 aa14.72□□□□□ -0.05
LIG1-218ENST00000599322 AZIN2Q96A70 460 aa14.72□□□□□ -0.05
LIG1-218ENST00000599322 LOXL4Q96JB6 756 aa14.72□□□□□ -0.05
LIG1-218ENST00000599322 ACP6Q9NPH0 428 aa14.72□□□□□ -0.05
LIG1-218ENST00000599322 TMEM51Q9NW97 253 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms