RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	APOD	P05090	189 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	HMBS	P08397	361 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	C1QTNF9	P0C862	333 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	TYR	P14679	529 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	CORO1A	P31146	461 aa	Known RBP	13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	GRIA2	P42262	883 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	SEC13	P55735	322 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	TRIP4	Q15650	581 aa	Predicted RBP	13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	STX1A	Q16623	288 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	FMNL3	Q8IVF7	1028 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	FAM217A	Q8IXS0	508 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	NAT16	Q8N8M0	369 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	TERB1	Q8NA31	727 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	STK32A	Q8WU08	396 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	PLD4	Q96BZ4	506 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	HHIP	Q96QV1	700 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	BBS2	Q9BXC9	721 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	SLC4A5	Q9BY07	1137 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	VPS45	Q9NRW7	570 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	ABCC13	Q9NSE7	274 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	TAB2	Q9NYJ8	693 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	DEC1	Q9P2X7	70 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	CYTH4	Q9UIA0	394 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	DNAJC12	Q9UKB3	198 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	AGO1	Q9UL18	857 aa	Known RBP	13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	ZNF510	Q9Y2H8	683 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	HBS1L	Q9Y450	684 aa	Known RBP	13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	PCDHGA5	Q9Y5G8	931 aa		13.91	□□□□□ -0.18
SREBF1-223	ENST00000584760	TRIM24	O15164	1050 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	MSI1	O43347	362 aa	Known RBP	13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	LTF	P02788	710 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	PNMA6A	P0CW24	399 aa	Predicted RBP	13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	USP8	P40818	1118 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	KIR2DL1	P43626	348 aa	Predicted RBP	13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	MRPS21	P82921	87 aa	Known RBP	13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	PDCL	Q13371	301 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	COL9A2	Q14055	689 aa	Predicted RBP	13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	DMC1	Q14565	340 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	PLK5	Q496M5	336 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	C2orf27A	Q580R0	203 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	SASS6	Q6UVJ0	657 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	TPGS1	Q6ZTW0	290 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	DENND1C	Q8IV53	801 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	CAMKK1	Q8N5S9	505 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	RNF139	Q8WU17	664 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	ZC3H10	Q96K80	434 aa	Known RBP	13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	DCLK3	Q9C098	648 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	MIS12	Q9H081	205 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	DNAJC17	Q9NVM6	304 aa	Known RBP	13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	ANO10	Q9NW15	660 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	TMEM63C	Q9P1W3	806 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	WDR35	Q9P2L0	1181 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	SFMBT1	Q9UHJ3	866 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	MMP17	Q9ULZ9	603 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	FHOD1	Q9Y613	1164 aa		13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	MUC22	E2RYF6	1773 aa	Predicted RBP	13.9	□□□□□ -0.18
SREBF1-223	ENST00000584760	C4orf47	A7E2U8	309 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760		E5RJQ4	531 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	GIPC1	O14908	333 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	DCLK1	O15075	740 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	PAPSS1	O43252	624 aa	Predicted RBP	13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	APBB3	O95704	486 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	PENK	P01210	267 aa	Predicted RBP	13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	IGLV3-27	P01718	113 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	FYN	P06241	537 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	CHKA	P35790	457 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	TNFRSF4	P43489	277 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	ACADSB	P45954	432 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	NOVA1	P51513	510 aa	Known RBP	13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	MYL5	Q02045	173 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	CREB5	Q02930	508 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	KRT31	Q15323	416 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	HSF5	Q4G112	596 aa	Predicted RBP	13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	PREPL	Q4J6C6	727 aa	Predicted RBP	13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	FYB2	Q5VWT5	728 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	GRAMD4	Q6IC98	578 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	UNQ6494/PRO21346	Q6UXR6	183 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	TMEM110	Q86TL2	294 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	SLC47A2	Q86VL8	602 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	SCUBE3	Q8IX30	993 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	FAM71A	Q8IYT1	594 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	CPXM2	Q8N436	756 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	ALLC	Q8N6M5	410 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	IL17RC	Q8NAC3	791 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	EDEM2	Q9BV94	578 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	NAA15	Q9BXJ9	866 aa	Known RBP	13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	DUSP15	Q9H1R2	295 aa	Predicted RBP	13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	ST7	Q9NRC1	585 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	FANCL	Q9NW38	375 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	ZMIZ1	Q9ULJ6	1067 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	PCDHGC3	Q9UN70	934 aa		13.89	□□□□□ -0.19
SREBF1-223	ENST00000584760	SDK1	Q7Z5N4	2213 aa		13.88	□□□□□ -0.19
SREBF1-223	ENST00000584760	CNOT1	A5YKK6	2376 aa	Known RBP	13.88	□□□□□ -0.19
SREBF1-223	ENST00000584760	FOXN3	O00409	490 aa	Predicted RBP	13.88	□□□□□ -0.19
SREBF1-223	ENST00000584760	GFRA2	O00451	464 aa		13.88	□□□□□ -0.19
SREBF1-223	ENST00000584760	PES1	O00541	588 aa	Known RBP	13.88	□□□□□ -0.19
SREBF1-223	ENST00000584760	SART1	O43290	800 aa	Known RBP	13.88	□□□□□ -0.19
SREBF1-223	ENST00000584760	CAVIN2	O95810	425 aa		13.88	□□□□□ -0.19
SREBF1-223	ENST00000584760	HNRNPL	P14866	589 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
SREBF1-223	ENST00000584760	UCHL3	P15374	230 aa		13.88	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 19 ms