RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 TBC1D20Q96BZ9 403 aa4.3□□□□□ -1.72
SMCHD1-209ENST00000583441 PBKQ96KB5 322 aa4.3□□□□□ -1.72
SMCHD1-209ENST00000583441 MARK4Q96L34 752 aa4.3□□□□□ -1.72
SMCHD1-209ENST00000583441 WDR24Q96S15 920 aa4.3□□□□□ -1.72
SMCHD1-209ENST00000583441 C17orf80Q9BSJ5 609 aa4.3□□□□□ -1.72
SMCHD1-209ENST00000583441 KLC4Q9NSK0 619 aa4.3□□□□□ -1.72
SMCHD1-209ENST00000583441 EHD3Q9NZN3 535 aa4.3□□□□□ -1.72
SMCHD1-209ENST00000583441 NKX1-2Q9UD57 310 aaPredicted RBP4.3□□□□□ -1.72
SMCHD1-209ENST00000583441 PGAP2Q9UHJ9 254 aa4.3□□□□□ -1.72
SMCHD1-209ENST00000583441 RIMKLBQ9ULI2 386 aa4.3□□□□□ -1.72
SMCHD1-209ENST00000583441 DRG1Q9Y295 367 aaKnown RBP4.3□□□□□ -1.72
SMCHD1-209ENST00000583441 GPR52Q9Y2T5 361 aa4.3□□□□□ -1.72
SMCHD1-209ENST00000583441 PCDHGB3Q9Y5G1 929 aa4.3□□□□□ -1.72
SMCHD1-209ENST00000583441 A1L4Q6 167 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 A8MVJ9 347 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 ADM5C9JUS6 153 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 FCHO1O14526 889 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 MPPED1O15442 326 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 ACTL6BO94805 426 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 ANXA6P08133 673 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 DLDP09622 509 aaKnown RBP4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 CST5P28325 142 aaPredicted RBP4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 LIPAP38571 399 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 FOLR3P41439 243 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 DGKQP52824 942 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 TPTEP56180 551 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 AP2B1P63010 937 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 BMPR2Q13873 1038 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 EFR3AQ14156 821 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 POSTNQ15063 836 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 PLAC9Q5JTB6 97 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 DENND2CQ68D51 928 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 SLC44A2Q8IWA5 706 aaPredicted RBP4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 SUN3Q8TAQ9 357 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 SPPL3Q8TCT6 385 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 PNISRQ8TF01 805 aaKnown RBP4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 THAP4Q8WY91 577 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 RUBCNQ92622 972 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 GLG1Q92896 1179 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 ZSCAN31Q96LW9 406 aaPredicted RBP4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 FAM167BQ9BTA0 163 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 SORBS1Q9BX66 1292 aaKnown RBP4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 AS3MTQ9HBK9 375 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 PRDM8Q9NQV8 689 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 RXFP3Q9NSD7 469 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 TXLNGQ9NUQ3 528 aa4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.29□□□□□ -1.72
SMCHD1-209ENST00000583441 PNMA6EA0A0J9YXQ4 647 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 EFCAB8A8MWE9 144 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 J3KTA2 159 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 IPO5O00410 1097 aaKnown RBP4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 YY2O15391 372 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 USP1O94782 785 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 WDR47O94967 919 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 PAX3P23760 479 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 MMP13P45452 471 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 MCM2P49736 904 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 CDK7P50613 346 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 EIF4A1P60842 406 aaKnown RBP4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 SUMO2P61956 95 aaKnown RBP4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 ACOX1Q15067 660 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 TBCCQ15814 346 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 TRIM60Q495X7 471 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 SULT6B1Q6IMI4 303 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 LIN54Q6MZP7 749 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 RINT1Q6NUQ1 792 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 JMJD6Q6NYC1 403 aaPredicted RBP4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 NFRKBQ6P4R8 1299 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 MTHFD1LQ6UB35 978 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 CLEC9AQ6UXN8 241 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 CAND1Q86VP6 1230 aaKnown RBP4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 PAF1Q8N7H5 531 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 RP9Q8TA86 221 aaKnown RBP4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 OVCA2Q8WZ82 227 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 SDCCAG3Q96C92 435 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 FBXL20Q96IG2 436 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 VPS50Q96JG6 964 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 ZBTB45Q96K62 511 aaPredicted RBP4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 TBATAQ96M53 351 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 DDX23Q9BUQ8 820 aaKnown RBP4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 DPCDQ9BVM2 203 aaPredicted RBP4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 KRTAP4-3Q9BYR4 195 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 UBA5Q9GZZ9 404 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 SPRTNQ9H040 489 aaPredicted RBP4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 PABPC3Q9H361 631 aaKnown RBP4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 SEPSECSQ9HD40 501 aaKnown RBP4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 KIF17Q9P2E2 1029 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 ANAPC4Q9UJX5 808 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 C19orf53Q9UNZ5 99 aaPredicted RBP4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 SLC27A6Q9Y2P4 619 aa4.28□□□□□ -1.72
SMCHD1-209ENST00000583441 KAT6AQ92794 2004 aa4.28□□□□□ -1.73
SMCHD1-209ENST00000583441 ADGRA2Q96PE1 1338 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 EXOC5O00471 708 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 DNPH1O43598 174 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 TJP3O95049 919 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 TOP3BO95985 862 aaKnown RBP4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 IL6RP08887 468 aaPredicted RBP4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 TMEM225BP0DP42 221 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 ZFXP17010 805 aaPredicted RBP4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 CERS1P27544 350 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms