RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 YAF2Q8IY57 180 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 MMP21Q8N119 569 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 HIPK2Q9H2X6 1198 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 SAP30LQ9HAJ7 183 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 TMEM45AQ9NWC5 275 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 OGDHLQ9ULD0 1010 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 THRAP3Q9Y2W1 955 aaKnown RBP4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 EHBP1L1Q8N3D4 1523 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 TTC3P53804 2025 aa4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 CCDC7Q96M83 1385 aa4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 ANKRD30BQ9BXX2 1392 aa4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 HECW1Q76N89 1606 aa4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 C16orf96A6NNT2 1141 aa4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 GTPBP1O00178 669 aaKnown RBP4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 MAP4K4O95819 1239 aaPredicted RBP4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 FGF2P09038 288 aa4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 BTF3P20290 206 aaKnown RBP4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 CARSP49589 748 aaKnown RBP4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 JAK3P52333 1124 aa4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 FAM110CQ1W6H9 321 aa4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 EARS2Q5JPH6 523 aaKnown RBP4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 MANEALQ5VSG8 457 aa4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 DAB2IPQ5VWQ8 1189 aa4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 CXorf57Q6NSI4 855 aaKnown RBP4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 MPLKIPQ8TAP9 179 aa4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 LRTOMTQ8WZ04 291 aa4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 FCRL5Q96RD9 977 aa4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 FAM83DQ9H4H8 585 aa4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 AGO4Q9HCK5 861 aaKnown RBP4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 SEMA4BQ9NPR2 832 aaPredicted RBP4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 KLHL42Q9P2K6 505 aa4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 DDX20Q9UHI6 824 aaKnown RBP4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 HPSEQ9Y251 543 aa4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 LRRIQ1Q96JM4 1722 aa4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 GCC2Q8IWJ2 1684 aa4.8□□□□□ -1.64
SMCHD1-208ENST00000583344 IGLV5-39A0A0G2JS06 123 aa4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 SLC22A23A1A5C7 686 aa4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 TMIGD3P0DMS9 266 aaPredicted RBP4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 TMEM225BP0DP42 221 aa4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 HOXA7P31268 230 aaPredicted RBP4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 CDKN2AP42771 156 aaKnown RBP4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 WDR5P61964 334 aaKnown RBP4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 RAE1P78406 368 aaKnown RBP4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 CCDC184Q52MB2 194 aa4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 FSTL5Q8N475 847 aaPredicted RBP4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 SMRP1Q8NCR6 262 aa4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 SLC25A28Q96A46 364 aa4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 SELENOOQ9BVL4 669 aa4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 CINPQ9BW66 212 aaPredicted RBP4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 MLXIPQ9HAP2 919 aa4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 ZNF287Q9HBT7 754 aa4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 C1orf112Q9NSG2 853 aa4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 SEMA5BQ9P283 1151 aa4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 CHD1O14646 1710 aa4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 RPRD2Q5VT52 1461 aaKnown RBP4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 SMG6Q86US8 1419 aaKnown RBP4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 ABCA5Q8WWZ7 1642 aa4.79□□□□□ -1.64
SMCHD1-208ENST00000583344 GAPVD1Q14C86 1478 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 SCGB1D2O95969 90 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 CD63P08962 238 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 B4GALNT1Q00973 533 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 MTAPQ13126 283 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 FHL3Q13643 280 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 CLCA4Q14CN2 919 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 MINDY4Q4G0A6 757 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 ARHGAP29Q52LW3 1261 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 UBAP2Q5T6F2 1119 aaKnown RBP4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 FAM102BQ5T8I3 360 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 RNF220Q5VTB9 566 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 LVRNQ6Q4G3 990 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 CCDC149Q6ZUS6 474 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 FAM156AQ8NDB6 213 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 PIGKQ92643 395 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 NLRP4Q96MN2 994 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 LRRC27Q9C0I9 530 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 FAM204AQ9H8W3 233 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 VPS4AQ9UN37 437 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 PROCRQ9UNN8 238 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 COG5Q9UP83 839 aa4.78□□□□□ -1.64
SMCHD1-208ENST00000583344 POLR1AO95602 1720 aaPredicted RBP4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 URB2Q14146 1524 aaKnown RBP4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 ZNF608Q9ULD9 1512 aaPredicted RBP4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 WDR47O94967 919 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 INMTO95050 263 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 MYF5P13349 255 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 ST6GAL1P15907 406 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 CACNB3P54284 484 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 DNASE1L3Q13609 305 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 POLD3Q15054 466 aaPredicted RBP4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 ODR4Q5SWX8 454 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 CCDC181Q5TID7 509 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 KRTAP5-11Q6L8G4 156 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 MZT2AQ6P582 158 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 FAM57BQ71RH2 274 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 CERS3Q8IU89 383 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 RBMXL3Q8N7X1 1067 aaKnown RBP4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 ASB5Q8WWX0 329 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 ZDHHC12Q96GR4 267 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 APIPQ96GX9 242 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms