RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 PSAPL1Q6NUJ1 521 aa21.43■■□□□ 1.02
SHMT1-209ENST00000582653 ARMCX6Q7L4S7 300 aa21.43■■□□□ 1.02
SHMT1-209ENST00000582653 RRAGAQ7L523 313 aa21.43■■□□□ 1.02
SHMT1-209ENST00000582653 ZSWIM1Q9BR11 485 aa21.43■■□□□ 1.02
SHMT1-209ENST00000582653 SRRTQ9BXP5 876 aaKnown RBP21.43■■□□□ 1.02
SHMT1-209ENST00000582653 NUSAP1Q9BXS6 441 aaKnown RBP21.43■■□□□ 1.02
SHMT1-209ENST00000582653 CALCOCO1Q9P1Z2 691 aa21.43■■□□□ 1.02
SHMT1-209ENST00000582653 KIAA1257Q9ULG3 409 aa21.43■■□□□ 1.02
SHMT1-209ENST00000582653 PIK3R2O00459 728 aa21.42■■□□□ 1.02
SHMT1-209ENST00000582653 GABBR2O75899 941 aa21.42■■□□□ 1.02
SHMT1-209ENST00000582653 LCP1P13796 627 aa21.42■■□□□ 1.02
SHMT1-209ENST00000582653 HOXD12P35452 270 aa21.42■■□□□ 1.02
SHMT1-209ENST00000582653 KCNH2Q12809 1159 aa21.42■■□□□ 1.02
SHMT1-209ENST00000582653 PKDCCQ504Y2 493 aa21.42■■□□□ 1.02
SHMT1-209ENST00000582653 FYB2Q5VWT5 728 aa21.42■■□□□ 1.02
SHMT1-209ENST00000582653 KIAA1211LQ6NV74 962 aa21.42■■□□□ 1.02
SHMT1-209ENST00000582653 ARHGEF19Q8IW93 802 aa21.42■■□□□ 1.02
SHMT1-209ENST00000582653 TRIM59Q8IWR1 403 aa21.42■■□□□ 1.02
SHMT1-209ENST00000582653 EHBP1Q8NDI1 1231 aa21.42■■□□□ 1.02
SHMT1-209ENST00000582653 EDEM1Q92611 657 aa21.42■■□□□ 1.02
SHMT1-209ENST00000582653 IPO9Q96P70 1041 aaKnown RBP21.42■■□□□ 1.02
SHMT1-209ENST00000582653 STRIP2Q9ULQ0 834 aa21.42■■□□□ 1.02
SHMT1-209ENST00000582653 IGHV1OR15-9A0A0B4J2B8 117 aa21.41■■□□□ 1.02
SHMT1-209ENST00000582653 YJEFN3A6XGL0 299 aa21.41■■□□□ 1.02
SHMT1-209ENST00000582653 WASH3PC4AMC7 463 aa21.41■■□□□ 1.02
SHMT1-209ENST00000582653 E7ENQ6 273 aa21.41■■□□□ 1.02
SHMT1-209ENST00000582653 PAEPP09466 180 aa21.41■■□□□ 1.02
SHMT1-209ENST00000582653 CEACAM1P13688 526 aa21.41■■□□□ 1.02
SHMT1-209ENST00000582653 CSRP1P21291 193 aaKnown RBP21.41■■□□□ 1.02
SHMT1-209ENST00000582653 ITPKAP23677 461 aa21.41■■□□□ 1.02
SHMT1-209ENST00000582653 RGS7P49802 495 aa21.41■■□□□ 1.02
SHMT1-209ENST00000582653 NOVA1P51513 510 aaKnown RBP21.41■■□□□ 1.02
SHMT1-209ENST00000582653 ZNF132P52740 706 aa21.41■■□□□ 1.02
SHMT1-209ENST00000582653 RPL6Q02878 288 aaKnown RBP21.41■■□□□ 1.02
SHMT1-209ENST00000582653 PAK1Q13153 545 aa21.41■■□□□ 1.02
SHMT1-209ENST00000582653 CAMK4Q16566 473 aa21.41■■□□□ 1.02
SHMT1-209ENST00000582653 BSPRYQ5W0U4 402 aa21.41■■□□□ 1.02
SHMT1-209ENST00000582653 FOXR2Q6PJQ5 311 aa21.41■■□□□ 1.02
SHMT1-209ENST00000582653 LCLAT1Q6UWP7 414 aa21.41■■□□□ 1.02
SHMT1-209ENST00000582653 CEP76Q8TAP6 659 aa21.41■■□□□ 1.02
SHMT1-209ENST00000582653 KCTD13Q8WZ19 329 aa21.41■■□□□ 1.02
SHMT1-209ENST00000582653 SFMBT1Q9UHJ3 866 aa21.41■■□□□ 1.02
SHMT1-209ENST00000582653 CNOT1A5YKK6 2376 aaKnown RBP21.4■■□□□ 1.02
SHMT1-209ENST00000582653 NPC1O15118 1278 aa21.4■■□□□ 1.02
SHMT1-209ENST00000582653 SETSIPP0DME0 302 aa21.4■■□□□ 1.02
SHMT1-209ENST00000582653 NDUFV2P19404 249 aa21.4■■□□□ 1.02
SHMT1-209ENST00000582653 BRD2P25440 801 aaKnown RBP21.4■■□□□ 1.02
SHMT1-209ENST00000582653 MFAP3P55082 362 aa21.4■■□□□ 1.02
SHMT1-209ENST00000582653 ZNF33AQ06730 810 aa21.4■■□□□ 1.02
SHMT1-209ENST00000582653 CETN1Q12798 172 aa21.4■■□□□ 1.02
SHMT1-209ENST00000582653 DUOXA1Q1HG43 343 aa21.4■■□□□ 1.02
SHMT1-209ENST00000582653 SH3PXD2AQ5TCZ1 1133 aa21.4■■□□□ 1.02
SHMT1-209ENST00000582653 PMF1Q6P1K2 205 aa21.4■■□□□ 1.02
SHMT1-209ENST00000582653 FMNL3Q8IVF7 1028 aa21.4■■□□□ 1.02
SHMT1-209ENST00000582653 SIX6OS1Q8N1H7 587 aa21.4■■□□□ 1.02
SHMT1-209ENST00000582653 CPXM2Q8N436 756 aa21.4■■□□□ 1.02
SHMT1-209ENST00000582653 SLC35F5Q8WV83 523 aa21.4■■□□□ 1.02
SHMT1-209ENST00000582653 MRGPRX1Q96LB2 322 aa21.4■■□□□ 1.02
SHMT1-209ENST00000582653 CACNA2D2Q9NY47 1150 aa21.4■■□□□ 1.02
SHMT1-209ENST00000582653 CLEC4EQ9ULY5 219 aa21.4■■□□□ 1.02
SHMT1-209ENST00000582653 RAD54BQ9Y620 910 aa21.4■■□□□ 1.02
SHMT1-209ENST00000582653 PLXND1Q9Y4D7 1925 aa21.39■■□□□ 1.02
SHMT1-209ENST00000582653 GIPC1O14908 333 aa21.39■■□□□ 1.01
SHMT1-209ENST00000582653 P4HA2O15460 535 aa21.39■■□□□ 1.01
SHMT1-209ENST00000582653 ENGP17813 658 aa21.39■■□□□ 1.01
SHMT1-209ENST00000582653 CNGA2Q16280 664 aa21.39■■□□□ 1.01
SHMT1-209ENST00000582653 GEN1Q17RS7 908 aa21.39■■□□□ 1.01
SHMT1-209ENST00000582653 METTL3Q86U44 580 aaKnown RBP21.39■■□□□ 1.01
SHMT1-209ENST00000582653 DEFB119Q8N690 84 aa21.39■■□□□ 1.01
SHMT1-209ENST00000582653 RBBP8NLQ8NC74 664 aaPredicted RBP21.39■■□□□ 1.01
SHMT1-209ENST00000582653 RNF139Q8WU17 664 aa21.39■■□□□ 1.01
SHMT1-209ENST00000582653 ZNF419Q96HQ0 510 aaPredicted RBP21.39■■□□□ 1.01
SHMT1-209ENST00000582653 PIWIL1Q96J94 861 aaKnown RBP21.39■■□□□ 1.01
SHMT1-209ENST00000582653 KREMEN1Q96MU8 473 aa21.39■■□□□ 1.01
SHMT1-209ENST00000582653 OLA1Q9NTK5 396 aaKnown RBP21.39■■□□□ 1.01
SHMT1-209ENST00000582653 THAP10Q9P2Z0 257 aaPredicted RBP21.39■■□□□ 1.01
SHMT1-209ENST00000582653 SLC6A14Q9UN76 642 aa21.39■■□□□ 1.01
SHMT1-209ENST00000582653 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.39■■□□□ 1.01
SHMT1-209ENST00000582653 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.39■■□□□ 1.01
SHMT1-209ENST00000582653 STON1Q9Y6Q2 735 aa21.39■■□□□ 1.01
SHMT1-209ENST00000582653 TPRP12270 2363 aaKnown RBP21.39■■□□□ 1.01
SHMT1-209ENST00000582653 M0QYV0 167 aa21.38■■□□□ 1.01
SHMT1-209ENST00000582653 GNA14O95837 355 aa21.38■■□□□ 1.01
SHMT1-209ENST00000582653 AFPP02771 609 aaKnown RBP21.38■■□□□ 1.01
SHMT1-209ENST00000582653 CYBBP04839 570 aa21.38■■□□□ 1.01
SHMT1-209ENST00000582653 MARSP56192 900 aaKnown RBP21.38■■□□□ 1.01
SHMT1-209ENST00000582653 DAOAP59103 153 aa21.38■■□□□ 1.01
SHMT1-209ENST00000582653 ENPP2Q13822 863 aa21.38■■□□□ 1.01
SHMT1-209ENST00000582653 E2F5Q15329 346 aa21.38■■□□□ 1.01
SHMT1-209ENST00000582653 TRIP4Q15650 581 aaPredicted RBP21.38■■□□□ 1.01
SHMT1-209ENST00000582653 ST3GAL2Q16842 350 aa21.38■■□□□ 1.01
SHMT1-209ENST00000582653 UAP1L1Q3KQV9 507 aa21.38■■□□□ 1.01
SHMT1-209ENST00000582653 FAM217AQ8IXS0 508 aa21.38■■□□□ 1.01
SHMT1-209ENST00000582653 CLEC4CQ8WTT0 213 aa21.38■■□□□ 1.01
SHMT1-209ENST00000582653 UCMAQ8WVF2 138 aa21.38■■□□□ 1.01
SHMT1-209ENST00000582653 PLD4Q96BZ4 506 aa21.38■■□□□ 1.01
SHMT1-209ENST00000582653 SLC2A11Q9BYW1 496 aa21.38■■□□□ 1.01
SHMT1-209ENST00000582653 INTS2Q9H0H0 1204 aaKnown RBP21.38■■□□□ 1.01
SHMT1-209ENST00000582653 SLC6A17Q9H1V8 727 aa21.38■■□□□ 1.01
SHMT1-209ENST00000582653 CNGB3Q9NQW8 809 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms