RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 TACR3P29371 465 aa7.31□□□□□ -1.24
SS18-214ENST00000580003 GHRHRQ02643 423 aa7.31□□□□□ -1.24
SS18-214ENST00000580003 KPNB1Q14974 876 aaKnown RBP7.31□□□□□ -1.24
SS18-214ENST00000580003 MEX3CQ5U5Q3 659 aaKnown RBP7.31□□□□□ -1.24
SS18-214ENST00000580003 MORN5Q5VZ52 161 aa7.31□□□□□ -1.24
SS18-214ENST00000580003 ANO7Q6IWH7 933 aa7.31□□□□□ -1.24
SS18-214ENST00000580003 PIK3AP1Q6ZUJ8 805 aa7.31□□□□□ -1.24
SS18-214ENST00000580003 OR52L2PQ8NGH6 319 aa7.31□□□□□ -1.24
SS18-214ENST00000580003 MAP4K1Q92918 833 aa7.31□□□□□ -1.24
SS18-214ENST00000580003 RNF26Q9BY78 433 aaPredicted RBP7.31□□□□□ -1.24
SS18-214ENST00000580003 PRSS22Q9GZN4 317 aa7.31□□□□□ -1.24
SS18-214ENST00000580003 EPS8L2Q9H6S3 715 aa7.31□□□□□ -1.24
SS18-214ENST00000580003 FBXO28Q9NVF7 368 aa7.31□□□□□ -1.24
SS18-214ENST00000580003 PI4KBQ9UBF8 816 aa7.31□□□□□ -1.24
SS18-214ENST00000580003 HEMK1Q9Y5R4 338 aaPredicted RBP7.31□□□□□ -1.24
SS18-214ENST00000580003 CTIFO43310 598 aaKnown RBP7.3□□□□□ -1.24
SS18-214ENST00000580003 NTSR2O95665 410 aa7.3□□□□□ -1.24
SS18-214ENST00000580003 ALADP13716 330 aa7.3□□□□□ -1.24
SS18-214ENST00000580003 SERPINB3P29508 390 aa7.3□□□□□ -1.24
SS18-214ENST00000580003 HTR3AP46098 478 aa7.3□□□□□ -1.24
SS18-214ENST00000580003 ALDH18A1P54886 795 aaKnown RBP7.3□□□□□ -1.24
SS18-214ENST00000580003 CBFBQ13951 182 aa7.3□□□□□ -1.24
SS18-214ENST00000580003 DAZAP2Q15038 168 aaPredicted RBP7.3□□□□□ -1.24
SS18-214ENST00000580003 FAM110CQ1W6H9 321 aa7.3□□□□□ -1.24
SS18-214ENST00000580003 ACSM6Q6P461 480 aa7.3□□□□□ -1.24
SS18-214ENST00000580003 SLC2A7Q6PXP3 512 aa7.3□□□□□ -1.24
SS18-214ENST00000580003 SKAP1Q86WV1 359 aa7.3□□□□□ -1.24
SS18-214ENST00000580003 AKAP1Q92667 903 aaKnown RBP eCLIP7.3□□□□□ -1.24
SS18-214ENST00000580003 CUL5Q93034 780 aa7.3□□□□□ -1.24
SS18-214ENST00000580003 PRPF18Q99633 342 aaKnown RBP7.3□□□□□ -1.24
SS18-214ENST00000580003 SEMA5BQ9P283 1151 aa7.3□□□□□ -1.24
SS18-214ENST00000580003 CCDC187A0A096LP49 1063 aa7.29□□□□□ -1.24
SS18-214ENST00000580003 GOLGA6L3A6NEY3 463 aa7.29□□□□□ -1.24
SS18-214ENST00000580003 NPC1O15118 1278 aa7.29□□□□□ -1.24
SS18-214ENST00000580003 FFAR2O15552 330 aa7.29□□□□□ -1.24
SS18-214ENST00000580003 BCAR3O75815 825 aa7.29□□□□□ -1.24
SS18-214ENST00000580003 NPPBP16860 134 aa7.29□□□□□ -1.24
SS18-214ENST00000580003 ATP5F1P24539 256 aaPredicted RBP7.29□□□□□ -1.24
SS18-214ENST00000580003 VPS41P49754 854 aa7.29□□□□□ -1.24
SS18-214ENST00000580003 SSBP2P81877 361 aaPredicted RBP7.29□□□□□ -1.24
SS18-214ENST00000580003 SEC23BQ15437 767 aa7.29□□□□□ -1.24
SS18-214ENST00000580003 ELF2Q15723 593 aa7.29□□□□□ -1.24
SS18-214ENST00000580003 PGBD2Q6P3X8 592 aa7.29□□□□□ -1.24
SS18-214ENST00000580003 ZNF527Q8NB42 609 aa7.29□□□□□ -1.24
SS18-214ENST00000580003 PRSS3P2Q8NHM4 247 aa7.29□□□□□ -1.24
SS18-214ENST00000580003 FSCN3Q9NQT6 498 aa7.29□□□□□ -1.24
SS18-214ENST00000580003 IGSF9Q9P2J2 1179 aa7.29□□□□□ -1.24
SS18-214ENST00000580003 SIRT4Q9Y6E7 314 aaPredicted RBP7.29□□□□□ -1.24
SS18-214ENST00000580003 FCHO1O14526 889 aa7.28□□□□□ -1.24
SS18-214ENST00000580003 PCDH17O14917 1159 aa7.28□□□□□ -1.24
SS18-214ENST00000580003 ITGA5P08648 1049 aa7.28□□□□□ -1.24
SS18-214ENST00000580003 MMP13P45452 471 aa7.28□□□□□ -1.24
SS18-214ENST00000580003 MSANTD2Q6P1R3 559 aa7.28□□□□□ -1.24
SS18-214ENST00000580003 GATAD2AQ86YP4 633 aa7.28□□□□□ -1.24
SS18-214ENST00000580003 WDR60Q8WVS4 1066 aa7.28□□□□□ -1.24
SS18-214ENST00000580003 RPL36ALQ969Q0 106 aaKnown RBP7.28□□□□□ -1.24
SS18-214ENST00000580003 ZNF70Q9UC06 446 aaPredicted RBP7.28□□□□□ -1.24
SS18-214ENST00000580003 BTBD3Q9Y2F9 522 aa7.28□□□□□ -1.24
SS18-214ENST00000580003 UBE2J1Q9Y385 318 aaPredicted RBP7.28□□□□□ -1.24
SS18-214ENST00000580003 DHHO43323 396 aa7.27□□□□□ -1.25
SS18-214ENST00000580003 USP12O75317 370 aa7.27□□□□□ -1.25
SS18-214ENST00000580003 TAF5LO75529 589 aa7.27□□□□□ -1.25
SS18-214ENST00000580003 ANXA6P08133 673 aa7.27□□□□□ -1.25
SS18-214ENST00000580003 ZNF81P51508 661 aa7.27□□□□□ -1.25
SS18-214ENST00000580003 TNFAIP2Q03169 654 aa7.27□□□□□ -1.25
SS18-214ENST00000580003 TRIP6Q15654 476 aaKnown RBP7.27□□□□□ -1.25
SS18-214ENST00000580003 TRIM71Q2Q1W2 868 aaKnown RBP7.27□□□□□ -1.25
SS18-214ENST00000580003 GGT6Q6P531 493 aa7.27□□□□□ -1.25
SS18-214ENST00000580003 C1orf228Q6PIY5 440 aa7.27□□□□□ -1.25
SS18-214ENST00000580003 SAMD3Q8N6K7 520 aa7.27□□□□□ -1.25
SS18-214ENST00000580003 DENND1AQ8TEH3 1009 aa7.27□□□□□ -1.25
SS18-214ENST00000580003 GLMPQ8WWB7 406 aa7.27□□□□□ -1.25
SS18-214ENST00000580003 SMG7Q92540 1137 aaKnown RBP7.27□□□□□ -1.25
SS18-214ENST00000580003 MPHOSPH6Q99547 160 aaKnown RBP7.27□□□□□ -1.25
SS18-214ENST00000580003 SENP7Q9BQF6 1050 aa7.27□□□□□ -1.25
SS18-214ENST00000580003 CDCP1Q9H5V8 836 aa7.27□□□□□ -1.25
SS18-214ENST00000580003 SLC52A1Q9NWF4 448 aa7.27□□□□□ -1.25
SS18-214ENST00000580003 ASNSD1Q9NWL6 643 aa7.27□□□□□ -1.25
SS18-214ENST00000580003 A0A087WV62 115 aa7.26□□□□□ -1.25
SS18-214ENST00000580003 ABHD14A-ACY1A0A1B0GW23 586 aa7.26□□□□□ -1.25
SS18-214ENST00000580003 INPPL1O15357 1258 aa7.26□□□□□ -1.25
SS18-214ENST00000580003 NDUFS1P28331 727 aa7.26□□□□□ -1.25
SS18-214ENST00000580003 SLC8A1P32418 973 aa7.26□□□□□ -1.25
SS18-214ENST00000580003 IL6STP40189 918 aaPredicted RBP7.26□□□□□ -1.25
SS18-214ENST00000580003 YPEL5P62699 121 aa7.26□□□□□ -1.25
SS18-214ENST00000580003 HSF1Q00613 529 aa7.26□□□□□ -1.25
SS18-214ENST00000580003 GRM4Q14833 912 aa7.26□□□□□ -1.25
SS18-214ENST00000580003 RINT1Q6NUQ1 792 aa7.26□□□□□ -1.25
SS18-214ENST00000580003 NRSN1Q8IZ57 195 aa7.26□□□□□ -1.25
SS18-214ENST00000580003 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.26□□□□□ -1.25
SS18-214ENST00000580003 SLC22A17Q8WUG5 538 aa7.26□□□□□ -1.25
SS18-214ENST00000580003 FAR2Q96K12 515 aa7.26□□□□□ -1.25
SS18-214ENST00000580003 PAAF1Q9BRP4 392 aa7.26□□□□□ -1.25
SS18-214ENST00000580003 WDR12Q9GZL7 423 aaKnown RBP7.26□□□□□ -1.25
SS18-214ENST00000580003 AQP12BA6NM10 295 aa7.25□□□□□ -1.25
SS18-214ENST00000580003 E5RJQ4 531 aa7.25□□□□□ -1.25
SS18-214ENST00000580003 TP73O15350 636 aa7.25□□□□□ -1.25
SS18-214ENST00000580003 ASNA1O43681 348 aa7.25□□□□□ -1.25
SS18-214ENST00000580003 SKAP2O75563 359 aaPredicted RBP7.25□□□□□ -1.25
SS18-214ENST00000580003 CD63P08962 238 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms